Updated on 2025/03/27

写真a

 
Shimazaki Yoji
 
Organization
Graduate School of Science and Engineering (Science) Major of Science and Engineering Chemistry Associate Professor
Title
Associate Professor
Contact information
メールアドレス
External link

Degree

  • 博士(理学)

Research Interests

  • タンパク質

  • 酵素

  • mass spectrometry

  • proteomics

  • protein

  • enzyme

  • electrophoresis

  • activity

  • sequence structure

  • 電気泳動法

  • 質量分析

  • 活性

  • 構造

  • プロテオミックス

Research Areas

  • Life Science / Functional biochemistry

  • Nanotechnology/Materials / Analytical chemistry

Research History

  • - 愛媛大学大学院 理工学研究科   准教授

    2007.4

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  • Ehime University   Faculty of Science   Research Associate

    1996.1 - 2007

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  • 三菱化学生命科学研究所   特別研究員

    1994.4 - 1995

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Professional Memberships

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Committee Memberships

  • 日本化学会   代表正会員  

    2023.3 - 2025.2   

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  • 日本化学会中国四国支部   化学教育協議会委員  

    2019.3 - 2020.2   

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  • 日本化学会   第9回CSJフェスタ実行委員  

    2019.1 - 2019.10   

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  • 日本化学会中国四国支部   支部幹事  

    2018.4 - 2020.2   

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  • 日本電気泳動学会   理事  

    2016.4   

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    Committee type:Academic society

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  • 日本電気泳動学会   評議員  

    2014.4   

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  • 日本分析化学会   中国四国支部幹事  

    2011   

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    Committee type:Academic society

    日本分析化学会

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  • 日本分析化学会   中国四国支部 庶務幹事  

    2004   

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    Committee type:Academic society

    日本分析化学会

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Papers

  • Separation of lysozyme-ovotransferrin complexes and the cooperative role of their components in egg white Reviewed

    Youji Shimazaki, Shinya Enomoto, Saki Ishiko

    Applied Biochemistry and Biotechnology   197   370 - 383   2025

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1007/s12010-024-05037-8

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  • Separation and functional analysis of diverse enzymes and their complexes using non-denaturing two-dimensional gel electrophoresis Invited Reviewed

    Youji Shimazaki

    Electrophoresis Letters   68 ( 1 )   1 - 5   2024

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    Authorship:Lead author, Last author, Corresponding author   Language:Japanese   Publishing type:Research paper (scientific journal)  

    DOI: 10.2198/electroph.68.1

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  • Applicability of esterase activity change analysis using a combined method of non-denaturing two-dimensional electrophoresis and reverse staining Reviewed

    Maho Inoue, Youji Shimazaki

    Journal of Electrophoresis   67 ( 1 )   1 - 7   2023.12

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    Authorship:Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Japanese Electrophoresis Society  

    DOI: 10.2198/jelectroph.67.1

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  • Electrophoresis Letters Invited Reviewed

    67 ( 2 )   71 - 75   2023.9

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    Authorship:Lead author, Corresponding author   Language:Japanese   Publishing type:Research paper (scientific journal)  

    DOI: 10.2198/electroph.67.71

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  • Electrophoretic extraction of the carboxylesterase-transferrin complexes after separation and detection by non-denaturing two-dimensional electrophoresis. Invited Reviewed

    Electrophoresis Letters   67 ( 1 )   37 - 42   2023.6

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    Authorship:Lead author, Corresponding author   Language:Japanese   Publishing type:Research paper (scientific journal)  

    DOI: 10.2198/electroph.67.37

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  • Analysis of the enzymatic degradation of lysozyme fibrils using a combination method of non-denaturing gel electrophoresis and double staining with Coomassie brilliant blue G-250 and R-250 dyes Reviewed

    Kenichiro Nagata, Ryo Ashikaga, Wakako Mori, Tamotsu Zako, Youji Shimazaki

    Analytical Sciences   39 ( 3 )   267 - 274   2023.2

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    Authorship:Last author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1007/s44211-022-00229-w

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  • Electrophoretic extraction of protein complexes after separation and detection by a combined method of non-denaturing two-dimensional electrophoresis and reversible staining Reviewed

    Karin Nakao, Youji Shimazaki

    Journal of Electrophoresis   66   5 - 11   2022.9

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    Authorship:Last author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.2198/jelectroph.66.5

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  • Characterization of enzymatic activity of lysozyme in lysozyme-ovotransferrin complex before and after treatment with trypsin Reviewed International journal

    Youji Shimazaki, Shunta Yabu

    Separation Science Plus   4 ( 10 )   377 - 383   2021.10

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Willey-VCH  

    DOI: 10.1002/sscp.202100030

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  • Electrophoretic injection and reaction of dye-bound enzymes to protein and bacteria within gel Reviewed

    Youji Shimazaki, Aoshi Inoue, Haruka Ikeuchi

    Journal of Microbiological Methods   176   106028 - 106028   2020.9

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    Authorship:Lead author, Corresponding author   Publishing type:Research paper (scientific journal)   Publisher:Elsevier BV  

    DOI: 10.1016/j.mimet.2020.106028

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  • Production of dye-binding esterase reactor after separation and detection using combined native isoelectric focusing and blue native electrophoresis Reviewed

    Youji Shimazaki, Hikari Nakamaru

    Journal of Electrophoresis   64 ( 1 )   1 - 6   2020.8

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Japanese Electrophoresis Society  

    DOI: 10.2198/jelectroph.64.1

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  • Analysis of the degradation of amyloid beta fibrils after separation via the combination of non-denaturing agarose electrophoresis and Congo red dye staining Reviewed

    Kawano Risa, Nakanishi Ayaka, Zako Tamotsu, SHIMAZAKI Yoji

    Separation Science Plus (Wiley-VCH)   2 ( 9 )   322 - 328   2019.9

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    Authorship:Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1002/sscp.201900049

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  • Removal of copper in microdroplets by ovomucoid hydrolysates bound to reverse-phase chromatography media within pipette tips Reviewed

    SHIMAZAKI Yoji, Inoue Suzuka

    Applied Biochemistry and Biotechnology   189   680 - 689   2019.9

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1007/s12010-019-03050-w

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  • Antibacterial activity of lysozyme-binding proteins from chicken egg white Reviewed

    SHIMAZAKI Youji, Ayumi Takahashi

    Journal of Microbiological Methods   154   19 - 24   2018.11

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.mimet.2018.10.001

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  • Microscale isolation of native forms of lysozyme from chicken egg white by gel isoelectric focusing Reviewed

    Youji Shimazaki, Yoshiko Ochi, Kennosuke Fujimura

    Electrophoresis   39 ( 8 )   1054 - 1061   2018.4

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Wiley-VCH Verlag  

    To separate and extract the native states of lysozyme from chicken egg white, a hybrid method for the mobilization of proteins after non-denaturing gel isoelectric focusing (IEF) combined with detection of lysozyme activity was developed. When the proteins in the chicken egg white were first separated using non-denaturing gel IEF, a lysozyme was obtained at the top of the gel column at the cathode end of the IEF. And, when the IEF-separated proteins of the egg white were mobilized by replacing the cathodic sodium hydroxide solution with phosphoric acid solution, an additional active state of the lysozyme that could be bound to proteins, such as ovotransferrin, was extracted from the solution. Furthermore, it was shown that the addition of lysozyme, obtained via IEF, to pure ovotransferrin generated a complex manifesting lysozyme activity, clearly indicating a successful reconstruction of the lysozyme-ovotransferrin complex in vitro. Therefore, the obtained results demonstrated that the native states of lysozymes, such as lysozyme and the lysozyme-ovotransferrin complex, can be effectively separated and extracted using non-denaturing gel IEF. Thus, this method can be applied to separate and extract different charge states of native proteins that retain their biological activities.

    DOI: 10.1002/elps.201700445

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  • Enzyme inhibitory activity of ovomucoid extracted using a carboxypeptidase Y-immobilized membrane Reviewed

    ShimazakiI Youji, Kosuke Tanaka, Keisuke Sakata

    CHROMATOGRAPHY   39 ( 1 )   33 - 39   2018.2

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.15583/jpchrom.2017.020

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  • Hydrolytic Activity of Esterase-Antibody Complexes Retained Within Gel Capsules After Complex Isolation Reviewed

    Youji Shimazaki, Rino Miyatsuka

    APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY   182 ( 3 )   1208 - 1217   2017.7

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:HUMANA PRESS INC  

    Delipidation in biological samples is important for some diagnostic tests and protein analyses. Lipids in the samples can be hydrolyzed by native esterases (ESs) within gel capsules after ES, and ES-antibody complexes are specifically trapped, extracted, and separated. Acrylamide and agarose gel capsules containing complexes of ES antibody were produced after the complexes were extracted using protein A-immobilized membranes, separated by non-denaturing electrophoresis, and stained by colloidal silver using glucose as a reductant. ES activity of ES-antibody complexes within the gel capsule was significantly higher than that in the complexes with the control antibodies upon isolation, separation, and detection of the complex. In addition, lipids bound to human serum albumin decreased after human plasma was treated with gel capsules containing ES-antibody complexes. We demonstrate that the gel capsule containing ES-antibody complexes can be successfully isolated using techniques described in this study. Furthermore, delipidation of human plasma is obtained by incubation with the gel capsule. These results indicate that surplus materials such as lipids in biological samples can be removed or reduced by gel capsule containing enzymes.

    DOI: 10.1007/s12010-016-2393-0

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  • Inhibition of Amyloid beta Protein Fibrillation via Carboxypeptidase Y after Protein Trapping Using Immunoaffinity Membranes Reviewed

    Masaki Saito, Tamotsu Zako, Ryoji Takahashi, Youji Shimazaki

    CHEMISTRY LETTERS   45 ( 11 )   1241 - 1243   2016.11

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    Authorship:Last author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:CHEMICAL SOC JAPAN  

    In this study, we firstly report inhibition of amyloid beta(42) (A beta(42)) fibrillation, which is related to the progression of Alzheimer's disease, by digestion using proteases, combined with A beta(42) isolation using an immunoaffinity membrane. Especially, digestion of A beta(42) with carboxypeptidase Y (CPY) is effective for the inhibition of A beta(42) fibrillation, indicating that carboxy-terminal digestion of A beta(42) is efficient for the prevention of its fibrillation. The combinational method of the immunoaffinity membrane with CPY digestion is applicable to suppress A beta(42) fibrillation.

    DOI: 10.1246/cl.160613

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  • Retaining activity of enzymes after capture and extraction within a single-drop of biological fluid using immunoaffinity membranes Reviewed

    Youji Shimazaki, Yuki Sato

    JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES   1021   108 - 113   2016.5

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:ELSEVIER SCIENCE BV  

    The purpose of this study was the measurement of enzyme activity within a single-drop of biological fluid after micropurification. Esterase and lactate dehydrogenase (LDH) retained their enzymatic activities after being captured by membrane-immobilized antibodies, which were prepared by non-denaturing two-dimensional electrophoresis, transferred to polyvinylidene difluoride and then stained by Ponceau S. The activities of both enzymes were also measured after being captured by antibodies and biotinylated antibodies bound to membrane-immobilized protein A or avidin, respectively. After esterase and LDH were captured from biological samples by membrane-immobilized protein A or avidin, their activities were semi-quantitatively measured on the surface of the membrane using fluorescence determination. More than 51% of enzyme activities were retained even after the enzymes were captured by biotinylated antibody bound to membrane-immobilized avidin and eluted by rinsing with 5 mu L of 1% Triton X-100, compared with the activities of the enzyme on the immunoaffinity membrane. (C) 2015 Elsevier B.V. All rights reserved.

    DOI: 10.1016/j.jchromb.2015.12.054

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  • Combined Method of Immunoaffinity Membrane Within Tubes and MALDI-TOF MS for Capturing and Analyzing Amyloid Beta Reviewed

    Youji Shimazaki, Yoko Takatsu

    APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY   177 ( 7 )   1565 - 1571   2015.12

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:HUMANA PRESS INC  

    Amyloid beta 1-40 peptide was specifically isolated and analyzed from human plasma spiked with amyloid beta using a combined method of biotinylated anti-amyloid beta antibody binding to membrane-immobilized avidin (immunoaffinity membrane) and matrix-assisted laser desorption /ionization time-of-flight mass spectrometry (MALDI-TOF MS). A solution of 10 mu L containing 13.6 ng to 2.9 mu g of amyloid beta peptide was examined in this method. After the isolated amyloid beta peptide from the spiked human plasma containing 2.9 mu g of amyloid beta peptide was incubated in the presence of trifluoroacetic acid, fibrillization of the peptides was observed using a thioflavin T assay. Furthermore, an immunoaffinity membrane present on the inner wall of a tube (diameter 2 mm) captured the amyloid beta peptide from the spiked human plasma. Our results indicate that the combination of the immunoaffinity membrane procedure and MALDI-TOF MS can be used to capture and analyze the target antigens such as amyloid beta in micro-spaces.

    DOI: 10.1007/s12010-015-1837-2

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  • Isolation and analysis of amyloid-beta 1-42 monomer and oligomers in liquid droplets using an immunoaffinity membrane Reviewed

    Youji Shimazaki, Yu Hirose

    JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES   972   53 - 57   2014.12

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:ELSEVIER SCIENCE BV  

    Monomeric molecules such as amyloid-beta can aggregate and transform into oligomeric and fibrous forms, which are implicated in the development and progression of Alzheimer's disease. Novel analytical techniques for the formation of oligomers are required to examine the neurotoxic amyloid-beta oligomers involving fibrils. After isolating amyloid-beta monomer 1-42 using a biotinylated antibody bound to membrane-immobilized avidin (immunoaffinity membrane), their masses were determined by MALDI-TOF MS. Fluorometric determination of more than 0.5 mu M of aggregated amyloid-beta in pipette droplets was performed after aggregation and dilution of 1 mM amyloid-beta. Thus, large (>105 nm) amyloid-beta oligomers in microliter volumes of fluids were isolated using the immunoaffinity membrane and quantitatively analyzed after removal of amyloid-beta monomers and small oligomers by non-denaturing electrophoresis. In addition, amyloid-beta oligomers were specifically isolated from a mixture of human plasma and aggregated amyloid-beta and then fluorometrically analyzed. Our results show that the combination of immunoaffinity membrane-binding and fluorescence determinations together with one drop analysis could be used to isolate and detect huge neurotoxic amyloid-beta oligomers such as fibrils in plasma samples. (C) 2014 Elsevier B.V. All rights reserved.

    DOI: 10.1016/j.jchromb.2014.09.021

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  • A microfluidic device containing membrane-immobilized antibodies for successively capturing cytosolic enzymes Reviewed

    Youji Shimazaki, Ai Hashimoto

    TALANTA   125   400 - 404   2014.7

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    A microfluidic device containing membrane-immobilized anti-esterase (ES) antibodies and anti-lactate dehydrogenase (LDH) antibodies was prepared. The membrane was prepared by transferring antibodies that had been separated by non-denaturing two-dimensional electrophoresis to a polyvinylidene difluoride membrane, which was then stained and cut into small pieces (16 mm(2)). In this microfluidic device, > 0.014 Unit mL(-1) of the purified porcine carboxylesterase was specifically captured by membrane-immobilized anti- ES antibodies and > 147 Unit mL(-1) of purified porcine LDH was specifically captured by membrane-immobilized anti-LDH antibodies. Furthermore, ES and LDH in micro-scale aliquots of porcine liver cytosol were successively captured by membrane-immobilized antibodies in the device, and the enzyme activities were quantitatively analyzed by spectrofluorometry. The results indicate that the microfluidic device containing membrane-immobilized antibodies can be used to investigate the activities of several types of intact enzymes. (C) 2014 Elsevier B.V. All rights reserved.

    DOI: 10.1016/j.talanta.2014.03.001

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  • Micro-Scale Extraction and Analysis of Intact Carboxylesterase after Trapping on an Immunoaffinity Membrane Surface Reviewed

    Ayaka Kimura, Youji Shimazaki

    APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY   172 ( 8 )   4053 - 4061   2014.4

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    Porcine liver carboxylesterase was captured using an immunoaffinity membrane, which was prepared by separating an anti-porcine esterase antibody using non-denaturing two-dimensional electrophoresis, followed by transfer to a polyvinylidene difluoride membrane and staining. The activity of this esterase was 0.008 units after it was captured in the tiny spaces (4 mm(2)) of this membrane and eluted by rinsing with 5 mu L of aspartic acid solution. The molecular mass of the eluted esterase was m/z 61,885 according to matrix-assisted laser desorption/ionization time-of-flight mass spectrometry after the purification of this enzyme from the porcine liver cytosol. The purified enzyme's activity was inhibited by 6,9-diamino-2-ethoxyacridine, and this inhibition was retained even after extracting the enzyme from the immunoaffinity membrane. These results indicate that micro-scale extraction and analysis of a carboxylesterase are possible when the enzyme is trapped using an immunoaffinity membrane and eluted with aspartic acid.

    DOI: 10.1007/s12010-014-0807-4

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  • Analysis of enzyme activity regulation by non-denaturing electrophoresis and application of this regulation for enzyme reactor production Reviewed

    Youji Shimazaki, Shizuka Miki

    JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY   28 ( 5 )   894 - 899   2013.10

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:INFORMA HEALTHCARE  

    Non-denaturing electrophoresis can be used to screen enzymes that self-regulate their activities by using a combination of enzymes and their inhibitors. Furthermore, this technique can be applied to develop enzyme reactors that self-regulate their activities. After separation of proteins from mouse liver cytosol by non-denaturing isoelectric focusing, lactate dehydrogense (LDH) and esterase activities were qualitatively and quantitatively examined using a combination of two-dimensional electrophoresis (2-DE) and non-denaturing stacking gel electrophoresis. Activities of mouse liver-derived LDH and carboxylesterase were reversibly inhibited by oxamate and 6,9-diamino-2-ethoxyacridine (acrinol), respectively, in the stacking gels and recovered when the enzymes migrated towards the separation gels. After separation and immobilization of the enzymes, their activities were inhibited by inhibitors and recovered after inhibitor removal. These results indicate that non-denaturing electrophoresis can be applied to select enzymes that self-regulate their activities and subsequently aid in the development of enzyme reactors that can control the enzyme activities.

    DOI: 10.3109/14756366.2012.693918

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  • Analysis of trypsin inhibition activity in human plasma proteins after separation by non-denaturing two-dimensional electrophoresis Reviewed

    Youji Shimazaki, Madoka Michhiro

    CLINICA CHIMICA ACTA   425   48 - 53   2013.10

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:ELSEVIER SCIENCE BV  

    Background: The functions of proteins can be retained following separation by non-denaturing two-dimensional electrophoresis (2-DE). The trypsin inhibition activities can then be examined following the separation and immobilization of the proteins under non-denaturing conditions.
    Methods: Human plasma proteins were separated using 2-DE and transferred onto a polyvinylidene difluoride membrane and stained using Ponceau S. The trypsin inhibition activity of the membrane-bound proteins was qualitatively examined using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. The activities were also quantitatively examined by analyzing the release of the azo-chromophore when azocasein was the substrate.
    Results: Ttypsin activity was inhibited by the haptoglobin and alpha(2)-macroglobulin spots located on the membrane, whereas the protease activity was retained for the spots containing albumin and transferrin. The inhibition activities of the alpha(2)-macroglobulin and haptoglobin spots were 4.81- and 4.83-fold higher, respectively, when compared with the inhibition activity of the albumin spot. An axis of the relative activities of trypsin inhibition was added to the 2-DE pattern of human plasma proteins to construct a non-denaturing 3-D map of human plasma proteins.
    Conclusion: This 3-D map should represent a suitable diagnostic tool for the qualitative and quantitative analyses of the ttypsin inhibition activities of proteins. (C) 2013 Elsevier B.V. All rights reserved.

    DOI: 10.1016/j.cca.2013.07.004

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  • Antigen digestion on the target plate of MALDI-TOF MS after isolation using an immunoaffinity membrane Reviewed

    Youji Shimazaki, Yuri Nishimura, Masaki Saito

    JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS   83   293 - 298   2013.9

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    A combination of methods is required to achieve separation of intact proteins and subsequently perform structure analysis to examine their unstable or external structures. The aim of this study was to develop a method of structure analysis in intact proteins after purification. Transferrin from human plasma was trapped by membrane-immobilized anti-transferrin antibody, which was produced by non-denaturing two-dimensional electrophoresis (2-DE), and transferred to a polyvinylidene fluoride (PVDF) membrane and stained with Ponceau S. The antigen transferrin was eluted by rinsing the membrane with trifluoroacetic acid (TFA) or aspartic acid. In addition, a method was established by which the purified human transferrin was enzymatically digested on a matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) target plate. Thus, after purification of the human transferrin antigen from tens of microlitres of human plasma using an immunoaffinity membrane, transferrin polypeptide fragments were obtained on the plate following digestion with pepsin in the presence of 0.1% TFA or endoproteinase Lys-C or Lys-C/trypsin with 0.001% sodium dodecyl sulphate (SDS). The results indicated that the combined methods of isolation using an immunoaffinity membrane and enzymatic digestion on a MALDI-TOF MS plate could be applied to the purification and microanalysis of antigens. This approach would be particularly applicable to the analysis of the primary structure and the less stable and highly accessible regions of antigens from limited sample volumes. (c) 2013 Elsevier B.V. All rights reserved.

    DOI: 10.1016/j.jpba.2013.05.031

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  • Enzymolysis of high density lipoprotein with a combination of membrane-immobilized esterase and trypsin Reviewed

    Takahiro Sakikawa, Youji Shimazaki

    JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS   71   179 - 182   2012.12

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    Apolipoprotein A-1 (apo A-1), a major component of high density lipoprotein (HDL), was efficiently digested by membrane-immobilized trypsin after HDL was treated with membrane-immobilized esterase. Compared to treatment with membrane-immobilized trypsin alone, the relative amounts of apo A-1 polypeptides, m/z 1723.78 and m/z 1568.82, increased by 2.7- and 3.9-fold, respectively, when HDL was treated with membrane-immobilized esterase and trypsin. Furthermore, the efficient digestion of apo A-1 by trypsin was inhibited when HDL was treated with membrane-immobilized esterase in the presence of an esterase inhibitor, 6,9-diamino-2-ethoxyacridine (acrinol). The data indicate that the lipid components of lipoproteins are released by membrane-immobilized esterase. This method can be used to investigate the structure and function of other apolipoproteins. (C) 2012 Elsevier By. All rights reserved.

    DOI: 10.1016/j.jpba.2012.07.032

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  • Epitope analysis using membrane-immobilized avidin and protein A Reviewed

    Youji Shimazaki, Yoshinori Kohno, Izumi Fukui, Toshiharu Koyashiki

    PROTEIN EXPRESSION AND PURIFICATION   83 ( 2 )   177 - 181   2012.6

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:ACADEMIC PRESS INC ELSEVIER SCIENCE  

    Adrenocorticotropic hormone (ACTH) and transferrin were trapped by biotinylated anti-ACTH antibody and anti-transferrin antibody, respectively, bound to membrane-immobilized avidin. Polypeptides with the sequences SYSMEHFR. SYSMEHFRWGKPVGK and SYSMEHFRWGKPVGKK were bound to the biotinylated anti-ACTH antibody on the membrane-immobilized avidin after the trapped ACTH was digested with trypsin on the membrane and non-binding polypeptides were washed from the membrane. Further, the polypeptides with the sequence SYSMEHFRWGKPVGK and SYSMEHFRWGKPVGKK were trapped by anti-ACTH antibody bound to membrane-immobilized protein A. The antibody recognized the WGKPVGK region of the antigen, ACTH. Polypeptide with the sequence SMGGKEDLIWELLNQAQEHFGKDK was bound to the biotinylated anti-transferrin antibody on the membrane-immobilized avidin after the trapped transferrin was digested with trypsin on the membrane and non-binding polypeptides were washed from the membrane. Further, the polypeptide with the sequence SMGGKEDLIWELLNQAQEHFGKDK was trapped by anti-transferrin antibody bound to membrane-immobilized protein A. The antibody recognized the SMGGKEDLIWELLNQAQEHFGKDK region of the antigen, transferrin. These results thus indicate that the combined methods of membrane-immobilized avidin and protein A can be applied to examine the epitopes of antigens. (C) 2012 Elsevier Inc. All rights reserved.

    DOI: 10.1016/j.pep.2012.03.017

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  • Successive analysis of antigen trapping and enzymatic digestion on membrane-immobilized avidin Reviewed

    Youji Shimazaki, Yoshinori Kohno

    ANALYTICAL BIOCHEMISTRY   422 ( 1 )   55 - 57   2012.3

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:ACADEMIC PRESS INC ELSEVIER SCIENCE  

    Avidin from egg white was migrated toward a cathode of nondenaturing electrophoresis and then immobilized on a polyvinylidene difluoride membrane. Adrenocorticotropic hormone (ACTH) was specifically captured after the biotinylated anti-ACTH antibody was bound to the membrane-immobilized avidin, and the captured ACTH was digested by the biotinylated trypsin on the membrane after extraction. The digested polypeptides from the ACTH were analyzed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). These results indicate that target substances can be specifically trapped and digested on membrane-immobilized avidin. (C) 2011 Elsevier Inc. All rights reserved.

    DOI: 10.1016/j.ab.2011.12.023

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  • Analysis of activity of esterase captured onto an immunoaffinity membrane Reviewed

    Youji Shimazaki, Takahiro Sakikawa, Ayaka Kimura

    CLINICA CHIMICA ACTA   413 ( 1-2 )   269 - 272   2012.1

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    Background: Specific proteins in biological fluids can be captured on an immunoaffinity membrane after polyclonal anti-porcine liver esterase antibodies are separated by non-denaturing 2-dimensional electrophoresis (2-DE) and transferred onto the membrane. The enzymatic activities of these captured proteins can then be monitored by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS).
    Methods: Polyclonal anti-porcine liver esterase antibody was separated by non-denaturing 2-DE, transferred onto a polyvinylidene difluoride membrane and stained with Ponceau S. Esterase activity was examined by enzyme activity staining and MALDI-TOF MS after antigens, including purified carboxylesterase from porcine liver and cytosolic esterase from porcine retina, were captured on the immunoaffinity membrane.
    Results: Esterase activity was detected on the immunoaffinity membrane after the enzyme was captured. Phosphatidylcholine hydrolysis by the esterase was monitored after the esterase was captured onto the membrane and attached to the target plate for MALDI-TOF MS.
    Conclusions: This method could be used to analyze changes in enzymatic activity under biological conditions such as health and disease conditions using immunoaffinity membranes and MALDI-TOF MS. (C) 2011 Elsevier B.V. All rights reserved.

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  • Direct trapping and analysis of hemoglobin in flowing fluid using membrane-immobilized anti-haptoglobin antibody Reviewed

    Youji Shimazaki, Ayaka Kimura

    JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS   56 ( 5 )   1085 - 1088   2011.12

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    Haptoglobin is known to bind to hemoglobin during intravascular hemolysis. Membrane-immobilized anti-haptoglobin antibody, which was produced after antibody was isolated by non-denaturing two-dimensional electrophoresis, was transferred to a polyvinylidene difluoride membrane and was stained using Ponceau S. The proteins bound to the membrane-immobilized anti-haptoglobin antibody were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and matrix-assisted laser desorption ionization/time-of-flight mass spectrometry. Hemoglobin was specifically obtained when the membrane-immobilized anti-haptoglobin antibody was incubated with human serum obtained from hemolysis blood. Furthermore, hemoglobin in the flowing fluid was captured by the membrane-immobilized anti-haptoglobin antibody and analyzed directly. The results indicate that hemolysis can be examined by direct trapping and analysis of hemoglobin under physiological conditions. (C) 2011 Elsevier B.V. All rights reserved.

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  • Reversible Inhibition of Esterase Activity After Separation and Immobilization Reviewed

    Takahiro Sakikawa, Youji Shimazaki

    APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY   165 ( 1 )   69 - 74   2011.9

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    An inhibitor, 9-amino-1,2,3,4-tetra hydroacridine (tacrine), is a reversible inhibitor of esterases. The reversible inhibition of the enzyme activity is thought to be examined after separation and immobilization of the enzyme under non-denaturing conditions. Hydrolytic changes of phosphatidylcholine by carboxylesterase were obtained using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry after the esterase was separated by non-denaturing two-dimensional electrophoresis, was immobilized to membranes and was stained by Ponceau S. The changes were inhibited after the enzyme on the membrane was treated by tacrine. Furthermore, the hydrolytic activity of the esterase was recovered after the inhibitor was washed with aspartic acid solution. These results indicate that the phosphatidylcholine hydrolysis activity of the isolated and immobilized enzyme is reversibly inhibited under non-denaturing conditions. Furthermore, this method can be developed to the production of an enzyme reactor able to regulate amounts of lipids.

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  • Simultaneous production of immunoaffinity membranes Reviewed

    Youji Shimazaki, Masayuki Miyamoto

    JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES   878 ( 28 )   2852 - 2856   2010.10

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    We simultaneously separated antibodies for transferrin, the third component of complement (C3), haptoglobin and transthyretin by multi-sample non-denaturing two-dimensional electrophoresis (2-DE), transferred them to a polyvinylidene difluoride (PVDF) membrane and then stained them using direct blue 71 to obtain membrane-immobilized antibodies. The antigens, transferrin, C3. haptoglobin and transthyretin were specifically bound to the membrane-immobilized antibodies and were eluted only after rinsing the membrane with acid solution. The antigens specifically bound to the membrane-immobilized antibodies were separated by SDS-PAGE and identified by peptide mass fingerprinting using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). Furthermore, transferrin and transthyretin were trapped and eluted by each membrane-immobilized antibody and detected by MALDI-TOF MS directly without separations. Using membrane-immobilized anti-transferrin antibody, transferrin in flowing blood was directly trapped and analyzed. The results indicated that membrane-immobilized antibodies are simultaneously produced, and that the immunoaffinity membranes can capture specific substances in flowing fluids. (C) 2010 Elsevier B.V. All rights reserved.

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  • Enzyme separation and isozyme heterogeneity analysis using non-denaturing two-dimensional electrophoresis Reviewed

    Youji Shimazaki, Kenta Shimizu, Suzuna Masaoka

    TALANTA   82 ( 3 )   1063 - 1067   2010.8

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    Carboxylesterase and sorbitol dehydrogenase are separated by non-denaturing two-dimensional electrophoresis (2-DE) of isoelectric focusing separation using 5% carrier ampholyte (pH 6-8) and 1.25% carrier ampholyte (pH 3-10) and size separation. Furthermore, activities of sorbitol, malate and lactate dehydrogenases are sequentially examined when the enzymes are separated by 2-DE and are sequentially reacted to sorbitol, malic and lactic acid, respectively, in the presence of nicotinamide adenine dinucleotide, nitro blue tetrazolium and phenazine methosulphate. Several kinds of enzymes including lactate dehydrogenize isozymes can be simultaneously separated using 2-DE. Furthermore, the binding differences between lactate dehydrogenase isozymes and concanavalin A (con A) can be examined using a combination of 2-DE and non-denaturing stacking gel electrophoresis. The results of this study indicate that non-denaturing 2-DE can be applied to both enzyme separation and isozyme heterogeneity analysis. (C) 2010 Elsevier B.V. All rights reserved.

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  • Maintenance of esterase activity and immunoreactivity after colloidal silver staining of non-denaturing proteins Reviewed

    Youji Shimazaki, Seigo Horikawa

    CLINICA CHIMICA ACTA   411 ( 13-14 )   992 - 993   2010.7

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  • Determination of Malic Acid Using a Malate Dehydrogenase Reactor After Purification and Immobilization in Non-Denaturing Conditions and Staining with Ponceau S Reviewed

    Youji Shimazaki, Takahiro Sakikawa

    PROTEIN AND PEPTIDE LETTERS   17 ( 8 )   1048 - 1052   2010

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    Mouse liver cytosolic malate dehydrogenase was separated by non-denaturing two-dimensional electrophoresis and identified. Furthermore, the activity of the enzyme was preserved even after separation, electroblotting onto a membrane and staining with Ponceau S in acidic buffer solution (pH 5.1). Using the membrane-immobilized enzyme, the malic acid content was estimated by measuring absorbance changes due to the conversion of nicotinamide adenine dinucleotide (NAD) to NADH. These results indicate that enzyme reactors can be systematically produced after purification, immobilization and staining with Ponceau S.

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  • Production of enzyme reactors after separation by non-denaturing two-dimensional electrophoresis and immobilization on membrane Reviewed

    Youji Shimazaki, Takahiro Kuroda

    BIOTECHNOLOGY LETTERS   31 ( 10 )   1545 - 1549   2009.10

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    Activities of carboxylesterase and malate dehydrogenase on membranes were retained after enzymes of mouse liver cytosol were separated by non-denaturing, two-dimensional electrophoresis (2-DE), stained using imidazole and zinc salts and electroblotted on to membranes. Furthermore, hydrolytic changes of phosphatidylcholine by the esterase were examined using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) after separation, and reversible staining and immobilization to membranes. Hydrolytic activity of the esterase on the membranes was 20% of the original activity of the tissue homogenate. The present method can be applied to the production of several types of enzyme reactors on membranes.

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  • Production of immunoaffinity membranes for direct analysis of antigen after antibody separation and blotting under non-denaturing conditions Reviewed

    Youji Shimazaki, Azusa Kodama

    ANALYTICA CHIMICA ACTA   643 ( 1-2 )   61 - 66   2009.6

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    Membrane-immobilized anti-transferrin antibody, which was produced after antibody was separated using non-denaturing two-dimensional electrophoresis (2DE), was transferred to a polyvinylidene difluoride (PVDF) membrane and was stained by direct blue 71. The antigen, transferrin, specifically bound to the membrane-unmobilized antibody and was eluted only after rinsing the membrane with glutamic acid or aspartic acid Solution. The antigen was analyzed directly by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) when the membrane was incubated with human plasma after the removal Of human serum albumin using polyethylene glycol. The transferrin extracted by glutamic acid or aspartic acid solution retained the binding of Fe(3+) in the presence of the carbonate anion. We found that immunoaffinity membranes can be useful for simple and rapid removal and extraction of intact proteins after antibody separation and blotting under non-denaturing conditions. (C) 2009 Elsevier B.V. All rights reserved.

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  • Simultaneous immobilization of dehydrogenases on polyvinylidene difluoride resin after separation by non-denaturing two-dimensional electrophoresis Reviewed

    Youji Shimazaki, Mariko Kadota

    ANALYTICA CHIMICA ACTA   618 ( 1 )   116 - 119   2008.6

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    We detected mouse liver malate, sorbitol and aldehyde dehydrogenases by negative staining, analysis of malate and sorbitol dehydrogenase activities using each substrate, and electron transfers including nicotinamide adenine dinucleotide (NAD) and nitroblue tetrazolium in non-denaturing two-dimensional electrophoresis (2-DE) gel. Dehydrogenases were also identified by electrospray ionization tandem mass spectrometry (ESI-MS/MS) after 2-DE separation and protein detection by negative staining. Spots of dehydrogenases separated by 2-DE were excised, and simultaneously transferred and immobilized on polyvinylidene difuoride (PVDF) resin by electrophoresis. The dehydrogenase activities remained intact after immobilization. In conclusion, resin-immobilized dehydrogenases can be simultaneously obtained after separation by non-denaturing 2-DE, detection by negative staining and transferring to resins. (C) 2008 Elsevier B.V. All rights reserved.

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  • Silver staining of an esterase compatible with activity and mass spectrometry analysis after separation using non-denaturing two-dimensional electrophoresis Reviewed

    Youji Shimazaki, Sono Watanabe

    CLINICA CHIMICA ACTA   390 ( 1-2 )   145 - 147   2008.4

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    Background: Enzyme activity is normally lost when formaldehyde is used as a reductant for silver staining after separation by electrophoresis. Hydrolytic activity of esterases can be examined on membranes without impairing enzyme activity when another reductant such as glucose is used for silver staining of the enzyme after separation by non-denaturing two-dimensional electrophoresis (2-DE) and subsequent transfer.
    Methods: The hydrolysis of lipids in human high density lipoprotein (HDL) by esterases first separated on a polyvinylidene fluoride membrane using non-denaturing 2-DE and silver stained using glucose as a reductant was examined.
    Results: Esterase activity was retained after glucose was used as a silver reductant for silver staining after separation using non-denaturing 2-DE. Lipids of HDL were removed by the esterases retained on the membrane after esterases were separated by 2-DE.
    Conclusion: The results indicated that hydrolytic enzyme activity is retained after separation, staining and immobilization. (C) 2008 Elsevier B.V. All rights reserved.

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  • Direct analysis of retinal dehydrogenase activity on an electroblotting membrane following separation by non-denaturing two-dimensional electrophoresis Reviewed

    Youji Shimazaki, Takahiro Kuroda

    JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES   860 ( 2 )   180 - 184   2007.12

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    The reaction from retinal to retinoic acid catalyzed by retinal dehydrogenase on a polyvinylidene difluoride (PVDF) membrane was examined using laser desorption ionization time of flight mass spectrometry (LDI-TOF MS) when the enzyme was separated by non-denaturing two-dimensional electrophoresis (2-DE), transferred onto the membrane, and stained without impairing the enzyme activity. Furthermore, the enzyme was analyzed by de novo sequencing using electrospray ionization tandem mass spectrometry (ESI-MS/MS) after proteins from mouse liver were separated by non-denaturing 2-DE, blotted onto the membrane, and stained. The results indicated that the reported methods could be applied for the direct examination of changes in retinoid catalyzed by enzymes on such membranes. (C) 2007 Elsevier B.V. All rights reserved.

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  • Analysis of lipid hydrolytic activity by esterase on blotting membrane followed by separation using non-denaturing two-dimensional gel electrophoresis Reviewed

    Youji Shimazaki, Masayuki Miyamoto

    BIOTECHNOLOGY AND BIOENGINEERING   98 ( 4 )   732 - 736   2007.11

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    After separation by microscale non-denaturing two-dimensional gel electrophoresis (2DE) and transferring to a blotting membrane, major proteins are detected by a staining of direct blue 71 in a neutral solution. The carboxylesterase on the membrane hydrolyzes phosphatidylcholine after the spot of carboxylesterase is excised from the membrane, and incubated with phosphatidylcholine. Lipids of human serum proteins and the purified human high density lipoprotein (HDL) are removed by enzymatic hydrolysis when human serum proteins and the purified HDL are respectively incubated with the spot of carboxylesterase on the membrane. These results indicate that carboxylesterase on the membrane hydrolyzes not only lipids such as phosphatidylcholine but also lipids of lipoproteins such as HDL after separation by the 2DE, transferring to the membrane and staining without impairing the activity. These results also indicate that a micro-immobilized enzyme reactor on the membrane can be produced when biological enzymes are separated by microscale 2DE, transferred to the membrane and stained without impairing their activities.

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  • Hydrolytic activity of lipase on anion-exchange solid phase column after separation and electrotransfer by non-denaturing electrophoresis Reviewed

    Youji Shimazaki

    JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS   70 ( 3 )   487 - 491   2007.4

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    This study reports the initial separation of phospholipase C-alpha from porcine retina using non-denaturing two-dimensional gel electrophoresis (2-DE). Detection was by negative staining and then its hydrolytic activity was estimated using alpha-naphthyl acetate in a 2-DE gel. A spot of phospholipase Calpha separated by 2-DE was excised. It was then electrophoretically transferred to an anion-exchange solid phase column after 40 mg, equal to dry weight of the solid resin from the cartridge (Accell (TM) Plus QMA, Waters Corporation), was packed into a disposable 1 ml syringe to make an anion-exchange solid phase column. Phosphatidylcholine was hydrolyzed in the anion-exchange solid phase column containing phospholipase C-alpha. The results indicated that a column with hydrolytic activity could be produced once lipases separated by non-denaturing 2-DE were transferred to the solid phase column. (c) 2006 Elsevier B.V. All rights reserved.

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  • Analysis of hydrolytic activity of phospholipase C alpha from porcine retina on retinyl ester and phosphatidylcholine using non-denaturing two-dimensional electrophoresis and mass spectrometry Reviewed

    Youji Shimazaki, Haruka Kishi, Masami Mori, Chiyo Yasuda, Takashi Manabe

    JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES   843 ( 1 )   42 - 46   2006.10

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    Hydrolysis of retinyl esters and phospholipids is important for visual functions of the animal retina. This study aimed to examine hydrolytic activity of an enzyme with native substrates such as retinyl esters and phospholipids responsible for this function in porcine retina. After cytosolic proteins were extracted from porcine retina, the proteins were separated using non-denaturing two-dimensional electrophoresis (2DE). Some major proteins and phospholipase Cot were identified by matrix-assisted laser desorption ionisation-time of flight-mass spectrometry (MALDI-TOF-MS) or electrospray ionisation-tandem mass spectrometry (ESI-MS/MS). The phospholipase C alpha showed hydrolytic activities with not only alpha-naphtyl acetate but also with retinyl palmitate and phosphatidylcholine when effects of different substrates were investigated using enzyme activity staining on 2DE or MALDI-TOF-MS. Results indicated that hydrolytic activity of the enzyme with non-native and native substrates could be examined using a combination of non-denaturing 2DE and MALDI-TOF-MS. (c) 2006 Elsevier B.V. All rights reserved.

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  • Detection of activity and mass spectrometric identification of mouse liver carboxylesterase and aldehyde dehydrogenase separated by non-denaturing two-dimensional electrophoresis after extraction with detergents Reviewed

    Y Shimazaki, T Manabe

    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS   1749 ( 1 )   95 - 101   2005.5

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    To examine the activities and identity of enzymes associated with organelles such as microsomes and mitochondria, proteins from mouse liver were extracted using the non-ionic detergents Nonidet P-40 (NP-40), polyoxyethylene sorbitan monooleate (Tween 80), polyoxyethylene isooctylphenyl ester (Triton X), n -octyl β-D-glucoside (octyl glycoside) or anionic detergent sodium dodecylsulfate (SDS) after the removal of cytosolic proteins. The proteins extracted by detergents were separated by non-denaturing two-dimensional electrophoresis (2-DE). The activities of esterase and aldehyde dehydrogenase were retained by non-denaturing 2-DE after treatment with each non-ionic detergent, but the activities were reduced or lost when the proteins were extracted with more than 0.5% SDS. For proteomic analysis of the organelle-associated proteins in mouse liver, proteins were separated by non-denaturing 2-DE and were identified using electrospray ionization tandem mass spectrometry (ESI-MS/MS) after the proteins were solubilized by octyl glycoside, NP-40 and 0. 1 % SDS. Several organelle-associated proteins such as carboxylesterase, aldehyde dehydrogenase, glucose regulated protein and HSP60 were identified. These results indicate that the activities and identity of detergent-soluble enzymes can be examined by this non-denaturing 2-DE and mass spectrometry. © 2005 Elsevier B.V. All rights reserved.

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  • Activity and sequence structure analysis of cytosolic dehydrogenase by mass spectrometry after separation by nondenaturing two-dimensional electrophoresis Reviewed

    Y Shimazaki, Y Sugawara

    ANALYTICAL BIOCHEMISTRY   328 ( 1 )   87 - 89   2004.5

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  • Nondenaturing two-dimensional electrophoresis enzyme profile involving activity and sequence structure of cytosol proteins from mouse liver Reviewed

    Y Shimazaki, Y Sugawara, T Manabe

    PROTEOMICS   4 ( 5 )   1406 - 1411   2004.5

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    After cytosol proteins in the mouse liver were separated by nondenaturing two-dimensional electrophoresis (2-DE), activities of several enzymes, such as fructose bisphosphatase, sorbitol dehydrogenase and malate dehydrogenase, transferase and sorbitol dehydrogenase, or several dehydrogenases, were analyzed on the same 2-D gel. Further, peptidase (or protease) activity can be examined by matrix-assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF-MS) when peptides such as angiotensin and adenocorticotropic hormone are incubated in the presence of the cytosol protein separated by nondenaturing 2-DE. Sequence structures of proteins on the 2-D gel were analyzed by peptide mass fingerprinting using MALDI-TOF-MS or by peptide sequencing using electrospray ionization-tandem mass spectrometry (ESI-MS/MS). The combination of activity and sequence structure accurately verified the position and activity range of the separated enzymes on the nondenaturing 2-D gel. From these results, we created a nondenaturing 2-D enzyme profile involving activities and sequence structure of cytosol proteins from mouse liver. This profile can be used for checking whether activities of enzymes were specifically or nonspecifically inhibited by inhibitors.

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  • Simultaneous analysis of esterase and transferase activities in cytosol proteins from the bovine retina by using microscale non-denaturing two-dimensional electrophoresis Reviewed

    Y Shimazaki, Y Hiraka, M Uesugi, T Manabe

    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS   1696 ( 1 )   51 - 57   2004.1

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    Esterase and transferase activities were analyzed simultaneously after cytosol proteins in the bovine retina were separated by microscale non-denaturing two-dimensional electrophoresis (2-DE). Esterase activity was specifically inhibited by an esterase inhibitor, 9-amino-1,2,3,4-tetra hydroacridine (tacrine), and transferase activity was specifically inhibited by a glutathione S-transterase (GST) inhibitor, 2-phenyl-1,2-benziso selenazol-3(2H)-one (ebselen). Both esterase and transferase were precipitated when ammonium sulfate was added to the cytosol up to 50% saturation (50% AS fraction), and were detected in the 50% AS fraction by using the 2-DE. After the cytosol proteins in the 50% AS fraction were separated by using non-denaturing 2-DE, polypeptides of the separated proteins were identified by peptide mass fingerprinting and post-source decay analysis by using MALDI-MS, or by immunoreactivity by using a specific antibody. The spots of esterase and transferase activities in the 2-DE pattern were identified as phosphodiesterase and GST, respectively. This simultaneous analysis of enzyme activities can be applied to screen-specific or non-specific medicines which affect enzyme activities. (C) 2003 Elsevier B.V. All rights reserved.

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  • Analysis of the activity and identification of enzymes after separation of cytosol proteins in mouse liver by microscale nondenaturing two-dimensional electrophoresis Reviewed

    Y Shimazaki, Y Sugawara, Y Ohtsuka, T Manabe

    PROTEOMICS   3 ( 10 )   2002 - 2007   2003.10

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    Enzyme activities such as of fructose bisphosphatase, malate dehydrogenase and carbonic anhydrase were analyzed after cytosol proteins in the mouse liver and were separated using nondenaturing two-dimensional electrophoresis (2-DE). The activities of both fructose bisphosphatase and malate dehydrogenase were inhibited by thyroxine, and fructose bisphosphatase activity was specifically inhibited by adenosine monophosphate in nondenaturing 2-DE. Furthermore, polypeptides of the separated proteins were analyzed by peptide mass fingerprinting using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry or by peptide sequencing using electrospray ionization-tandem mass spectrometry, or both. Proteins separated by 2-DE were identified. These results indicate that the function of proteins such as enzyme activity, and their sequence structure can be analyzed, for example by peptide mapping and peptide sequencing, after the proteins have been separated by nondenaturing 2-DE. Present results also indicate analysis of enzyme activity using nondenaturing 2-DE can be applied to screen substances which affect enzyme activity.

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  • Simple quantification of Cu,Zn-superoxide dismutase activity after separation by non-denaturing isoelectric focusing Reviewed

    Y Shimazaki, H Ohnishi, S Matsuura, T Manabe

    BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS   1571 ( 3 )   245 - 248   2002.7

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    The Cu,Zn-superoxide dismutase (SOD) activity in bovine retina cytosol was separated from retinal pigment using short-length non-denaturing isoelectric focusing (IEF) (15-mm long x 1.3-mm i.d. column) and detected using non-denaturing two-dimensional electrophoresis (2-DE), After the SOD and pigment in the retina cytosol are separated, SOD activity can be quantified by water-soluble tetrazolium salt. We also found that SOD separated by this IEF retained its native function. (C) 2002 Elsevier Science B.V. All rights reserved.

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  • Enzyme activity analysis of soluble proteins using non-denaturing two-dimensional electrophoresis Reviewed

    Y Shimazaki, Y Hiraka, H Ohnishi, T Manabe

    BUNSEKI KAGAKU   51 ( 6 )   367 - 371   2002.6

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    Non-denaturing two-dimensional electrophoresis (2-DE) can be applied to the separation of soluble proteins with high resolution. The separated proteins retain their physiological functions. The present study indicates that soluble proteins of the bovine retina were separated by non-denaturing 2-DE, and the enzyme activities of esterase, dehydrogenase, superoxide dismutase and transferase were detected in the presence of each enzyme-specific substrate and chromophore. While the activities of esterase and dehydrogenase were inhibited by a cholinesterase inhibitor, 9-amino-1,2,3,4-tetra hydroacridine (tacrine), the transferase activity was not affected. The enzymes separated by non-denaturing 2-DE were analyzed by matrix-assisted laser desorption/ionization time-of-flight-mass spectrometry (MALDI-TOF-MS). These results indicate that non-denaturing 2-DE is applicable to analyzing of the functions and structures of soluble proteins.

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  • 未変性条件の二次元電気泳動法による水溶性タンパク質の酵素活性解析 Reviewed

    島崎洋次, 平加容子, 大西弘美, 真鍋敬

    分析化学   51 ( 6 )   367 - 371   2002

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  • Isolation of the third component of complement and its derivative with anaphylatoxin-like activity from the plasma of the newt Cynops pyrrhogaster Reviewed

    Y Shimazaki, K Maeyama, T Fujii

    DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY   25 ( 5-6 )   467 - 474   2001.6

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    The third component of complement (C3) of a newt, Cynops pyrrhogaster, was purified using a fast protein liquid chromatography technique. The purified newt C3 consists of two polypeptide chains (the molecular masses of the alpha and beta -chains of C3 were 120,000 and 70,000. respectively) linked by disulfide: bonds. The alpha -chain retained an internal thiolester bond that was cleaved with methylamine, acid the N-terminal amino acid sequence of the alpha -chain was XVQLIDAKAGKAAKF. Digestion of newt C3 with trypsin yielded fragments that induced significant histamine release from newt peritoneal cells. These results: indicate that newt C3 retains structural and functional properties shared with mammalian C3. (C) 2001 Elsevier science Ltd. All rights reserved.

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  • Determination of the enzyme for the fragmentation of the third component of complement using two-dimensional electrophoresis. Reviewed

    Youji Shimazaki, Masayoshi Muro, Takashi Manabe

    Seibutsu butsuri kagaku   45 ( 1 )   89 - 92   2001

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    After the albumin content of human plasma proteins was decreased by the addition of polyethylene glycol, the plasma proteins were separated in non-denaturing isoelectric focusing (IEF) gel. The separated proteins in the IEF gel were digested with one of three enzymes; trypsin, <i>Achromobacter</i> protease I (API) or <i>Staphylococcus aureus</i> V8 protease (V8). Proteins in the gel were boiled in the presence of mercaptoethanol/SDS, and constituent polypeptides of proteins were separated by SDS-PAGE. The electrophoretic pattern of polypeptide spots were compared to that of non-denaturing IEF/SDS-PAGE. The α chain of the third component of complement (C3α) was effectively digested with trypsin, but albumin and IgG were not effectively fragmented with trypsin. On the other hand, albumin was digested with API and V8 protease, but C3α was not effectively fragmented with these enzymes. These results indicate that trypsin is the most effective enzyme for the fragmentation of C3 in the IEF gel.

    DOI: 10.2198/sbk.45.89

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  • Selection of an effective enzyme for digestion of non-denaturing proteins using microscale two-dimensional electrophoresis Reviewed

    Y Shimazaki, M Muro, T Manabe

    CLINICA CHIMICA ACTA   302 ( 1-2 )   221 - 224   2000.12

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    DOI: 10.1016/S0009-8981(00)00329-6

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  • Two distinct mechanisms underlie the stimulation of neurotransmitter release by phorbol esters in clonal rat pheochromocytoma PC12 cells Reviewed

    S Iwasaki, M Kataoka, M Sekiguchi, Y Shimazaki, K Sato, M Takahashi

    JOURNAL OF BIOCHEMISTRY   128 ( 3 )   407 - 414   2000.9

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    Phorbol ester treatment induces the phosphorylation of SNAP-25 at Ser(187) and the potentiation. of Ca2+-induced dopamine (DA) and acetylcholine (Ach) release from PC12 cells. In order to evaluate the functional consequences of phosphorylation, quantitative analysis was carried out using an. anti-phosphopeptide antibody that specifically recognizes SNAP-25 phosphorylated at Ser(187), DA and ACh release, assayed in low-K+ as well as high-K+ solution, increased by treating the cells with phorbol-12-myristate-13-acetate (PMA); however, the stimulation of high-K+-dependent release occurred at lower concentrations and with shorter exposures to PMA than that of the basal release in low-K+-solution, The PMA-induced phosphorylation of SNAP-25 did not correlate with the potentiation of high-K+-dependent neurotransmitter release. The potentiation of high-K+-dependent DA release by phorbol 12,13-diacetate (PDA), a water soluble phorbol ester, almost completely disappeared within 1 min after washing PDA in the presence of okadaic acid, conditions under which the phosphorylation of SNAP-25 persisted for at least 15 min, PMA-induced phosphorylation of SNAP-25 was inhibited by staurosporine, however, the potentiation of high-K+-dependent PA release was suppressed only partially. These results indicate that protein kinase activation does not account for a large fraction of the phorbol ester-induced potentiation of depolarization-dependent neurotransmitter release from PC12 cells.

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  • Detection and identification of constitutive polypeptides of the third component of complement using microscale two-dimensional electrophoresis Reviewed

    Youji Shimazaki, Mai Fujiwara, Takashi Manabe

    Seibutsu butsuri kagaku   44 ( 1 )   21 - 25   2000

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    We have reported that the third component of complement (C3) is observed in the pattern of microscale non-denaturing two-dimensional electrophoresis (2-DE) after removal of IgG and IgA using protein A agarose and antibodies.<sup>1)</sup> For the investigation of constitutive polypeptides of the C3, the constituent polypeptides of human plasma proteins were analyzed using non-denaturing isoelectric focusing (IEF) in the first dimension and treated with mercaptoethanol/SDS, and then subjected to the second dimensional SDS electrophoresis (non-denaturing IEF/reduced-SDS PAGE). The α chain of C3 spot was detected in the pattern of non-denaturing IEF/reduced-SDS PAGE, but, the β chain of C3 spot was hidden by albumin spot. After albumin was removed using polyethylene glycol, both C3α and C3β spots were observed in the pattern of the non-denaturing IEF/reduced-SDS PAGE. The combining analysis of C3 in the non-denaturing 2-DE and the constituent polypeptides in the non-denaturing IEF/reduced-SDS PAGE can be useful for the analysis of C3 and its fragments during the activation of complements.

    DOI: 10.2198/sbk.44.21

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  • Protein spot recognition on the non-denaturing and denaturing two-dimensional electrophoresis patterns using in situ immunosubtraction via Protein A agarose and antibodies Reviewed

    Y Shimazaki, S Ohara, T Manabe

    JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS   39 ( 3 )   179 - 184   1999.5

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:ELSEVIER SCIENCE BV  

    Specific proteins in small amounts of human plasma were subtracted from patterns of non-denaturing two-dimensional electrophoresis (non-denaturing 2-DE) by layering a 7 mu l aliquot of Protein A agarose-antibody complex on the top of an isoelectric focusing (IEF) gel before the loading of a plasma sample. The Protein A agarose suspension was recovered after non-denaturing IEF and was mixed with 8 M urea-5% 2-mercaptoethanol-1% NP-40 to extract the antibody and the specific plasma protein from Protein A agarose. The extract was then subjected to denaturing two-dimensional electrophoresis (denaturing 2-DE) and the location of the specific polypeptide was determined. The technique can be applied to the extraction and analysis of proteins in small amounts of samples. (C) 1999 Elsevier Science BN. All rights reserved.

    DOI: 10.1016/S0165-022X(99)00014-7

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  • Localization of a visual Gq protein in the photoreceptors of a polychaete, Perinereis brevicirris (Annelida) Reviewed

    Y Miyako-Shimazaki, Y Shimazaki, K Ohtsu, M Yamamoto

    CELL AND TISSUE RESEARCH   296 ( 2 )   427 - 431   1999.5

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    Heterotrimeric GTP-binding proteins (G proteins) play an important role in phototransduction. The presence of G-protein subclasses has been reported in photoreceptive membranes, e.g., the Gi subgroup (transducin) in vertebrate rods, and the Gq subgroup in the eyes of the Arthropoda and the Mollusca. We examined the immunoreactivity and distribution of a Gq homologue in the cerebral ocelli of Perinereis brevicirris (Polychaeta, Annelida) using an anti-GqC antibody raised against a conserved sequence at the C-terminal of the a-subunit of Gq (Gq-alpha). The anti-GqC antibody labeled a 48-kDa band on the Western blot of proteins from the Perinereis ocelli. The anti-GtC antibody, which is raised against the C-terminal sequence of bovine transducin cc-subunit (Gt-alpha), did not cross-react to the ocellar proteins of Perinereis. The rhabdomeric layers of the anterior and posterior ocelli were strongly labeled by anti-GqC on light-microscopic immunohistology. Immunoelectron microscopy showed that the Gq molecules were specifically localized in the photoreceptive membrane of the rhabdomeric microvilli. These results suggest that the Gq protein plays a role in the phototransduction of the Perinereis ocelli.

    DOI: 10.1007/s004410051302

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  • Removal of specific protein spots on the patterns of non-denaturing two-dimensional electrophoresis using protein A agarose and antibodies Reviewed

    Y Shimazaki, S Ohara, T Manabe

    JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS   37 ( 1-2 )   1 - 4   1998.9

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    Protein spots, such as immunoglobulin G (IgG), A (IgA) or alpha(2)-macroglobulin, on the patterns of non-denaturing two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) were selectively removed by the application of protein A or antibody;conjugated protein A agarose to the first-dimension gel top at the cathode side. A protein residing at pI 5.8 and with a molecular mass of about 200 kDa was clearly detected when the IgG and IgA spots were removed from the 2-D PAGE pattern. (C) 1998 Elsevier Science B.V. All rights reserved.

    DOI: 10.1016/S0165-022X(98)00004-9

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  • Application of two-dimensional electrophoresis without denaturing agents to comparative study of vertebrate plasma proteins. Reviewed

    Youji Shimazaki, Takashi Manabe

    Seibutsu busturi kagaku   42 ( 1 )   13 - 18   1998

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    A comparative study of vertebrate plasma proteins was performed by two-dimensional electrophoresis (2-D PAGE) without denaturing agents in order to obtain a perspective of the variation of plasma protein composition in different vertebrates. Plasma from raccoon, chicken, turtle, newt, goldfish and human was subjected to the analysis. The 2-D PAGE patterns offered information on vertebrate plasma proteins in their physiological conditions: their isoelectric point (pI), approximate molecular weight (<i>M. W.</i>) and quantity. Each vertebrate plasma protein showed a characteristic protein distribution, reflecting the evolutionary changes in DNA sequence and the expression of plasma protein. On the other hand, for some plasma proteins, the structural relationships between human and other vertebrates were suggested immunochemically. A series of spots detected at pI 6.2-8.3, <i>M. W</i>. 850-kDa, observed in the 2-D PAGE patterns of raccoon, chicken and turtle plasma was immunochemically stained by antihuman immunoglobulin M antibody. And, a series of spots detected at pI 4.8-5.5, <i>M. W</i>. 500-kDa in the patterns of raccoon, chicken and newt plasma was immunochemically stained by anti-human α<sub>2</sub>-macroglobulin antibody. These results indicate that a perspective of the variation of plasma protein composition in different vertebrates may be obtained by 2-D PAGE without denaturing agents.

    DOI: 10.2198/sbk.42.13

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  • Separation of chicken egg proteins using two-dimensional electrophoresis in the absence of denaturing agents. Reviewed

    Youji Shimazaki, Takashi Manabe

    Seibutsu butsuri kagaku   42 ( 3 )   155 - 159   1998

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Japanese Electrophoresis Society  

    Using microscale multisample two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) in the absence of denaturing agents, eight protein samples can be simultaneously analyzed and compared. In the present study, this method was applied for the analysis of chicken serum, chicken egg yolk and chicken egg albumen proteins, and the 2-D PAGE pattern of chicken yolk and albumen were compared with that of chicken serum. The spot locations (pI and <i>Mr</i>) of yolk proteins resembled with that of chicken serum, but those of albumen proteins were considerably different from those of chicken serum. Employing the techniques of electrophoretic blotting and immunochemical staining, immunoglobulin G (IgG), third component of complement (C3) and transferrin were identified in the patterns of chicken serum and yolk proteins.

    DOI: 10.2198/sbk.42.155

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  • Effect of formoguanamine on structure and function of the compound eye of the butterfly, Papilio xuthus Reviewed

    Y MiyakoShimazaki, Y Shimazaki, E Eguchi

    ZOOLOGICAL SCIENCE   14 ( 1 )   29 - 35   1997.2

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    Formoguanamine hydrochloride (FG) is known as a potent chemical to induce blindness in chick eyes by disrupting the pigment epithelium and visual cells in the retina. In this study, we examined the effect of FG on the structure and function of :he compound eyes of the butterfly, Papilio xuthus (Lepidoptera, Insecta). We administrated 2 mg FG per 1 g body weight of the pupa at about the first one third of the whole pupal period, because accomplishment of morphogenesis of the compound eye occurs in the last half of the pupal period. As a result, unusual membranous structures such as trophospongium-like structures and myeloid bodies were observed in the cytoplasm of the retinular cells besides the normal rhabdom. This result suggests that FG treatment influences on some steps in the formation of rhabdom membranes. However, the amount of chromophore, 3-hydroxyretinal and the responses to white light recorded by the ERG method from FG-treated specimens were not different from the control animals.

    DOI: 10.2108/zsj.14.29

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  • Phosphorylation of 25-kDa synaptosome-associated protein - Possible involvement in protein kinase C-mediated regulation of neurotransmitter release Reviewed

    Y Shimazaki, T Nishiki, A Omori, M Sekiguchi, Y Kamata, S Kozaki, M Takahashi

    JOURNAL OF BIOLOGICAL CHEMISTRY   271 ( 24 )   14548 - 14553   1996.6

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    Protein kinase C-mediated phosphorylation of a 25-kDa synaptosome-associated protein (SNAP-25) was examined in living PC12 cells, Phorbol 12-myristate 13 acetate treatment enhanced high potassium-induced [H-3]-norepinephrine release, and a 28-kDa protein recognized by an anti-SNAP-25 antibody was phosphorylated on Ser residues. The molecular size of the phosphorylated band decreased slightly following treatment with Clostridium botulinum type A neurotoxin, whereas the band disappeared after treatment with botulinum type E neurotoxin, indicating that the 28-kDa protein was SNAP-25, A phosphorylation is likely to occur at Ser(187), as this is the only Ser residue located between the cleavage sites of botulinum type A and E neurotoxins, SNAP-25 of PC12 cells was phosphorylated by purified protein kinase C in vitro, and the amount of syntaxin co immunoprecipitated with SNAP-25 was decreased by phosphorylation, These results suggest that the phosphorylation of SNAP-25 may be involved in protein kinase C-mediated regulation of catecholamine release from PC12 cells.

    DOI: 10.1074/jbc.271.24.14548

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  • LIGHT-DEPENDENT METABOLIC PATHWAY OF 3-HYDROXYRETINOIDS IN THE EYE OF A BUTTERFLY, PAPILIO-XUTHUS Reviewed

    Y SHIMAZAKI, E EGUCHI

    JOURNAL OF COMPARATIVE PHYSIOLOGY A-SENSORY NEURAL AND BEHAVIORAL PHYSIOLOGY   176 ( 5 )   661 - 671   1995.5

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    1. After the intact compound eyes of the butterfly Papilio xuthus were adapted to darkness, white, blue (lambda max 460 nm) or orange light (lambda max 580 nm), the eyes were separated into the distal (primary pigment cells, the dioptric apparatus and ca. 30% of retinal tissue) and the proximal layers (the rest of the retinal tissues). Each layer was separated into a supernatant and a precipitate. Both in white and blue light-adapted eyes, the amount of 11-cis 3-hydroxyretinal increased in the supernatant of the distal layer (Sup-DL) much more than it did in dark-adapted eyes. No increase was observed in the Sup-DL of orange light-adapted eyes.
    2. When all-trans retinol (non-native chemical) was added to the Sup-DL, it was converted to all-trans retinal under the darkness, and to all-trans and 11-cis retinal by blue light irradiation. When all-trans retinal was added to the Sup-DL, the isomerization of all-trans retinal to 11-cis retinal was accelerated by the blue light.
    3. The Sup-DL was separated into ammonium sulfate soluble (AS-sup) and insoluble (AS-ppt) fractions. The AS-ppt fraction contained 3-hydroxyretinal but no 3-hydroxyretinol. Blue light irradiation to the AS-ppt fraction induced an increase in 11-cis 3-hydroxyretinal, with a concomitant decrease in all-trans 3-hydroxyretinal.
    These results indicate that both the oxidation of all-trans 3-hydroxyretinol to all-trans 3-hydroxyretinal and the light-dependent isomerization of all-trans 3-hydroxyretinal to 11-cis isomer take place in the tissues of the distal layer of the eyes.

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  • SYNTHESIS OF 3-HYDROXYRETINAL IN THE CYTOSOL OF THE BUTTERFLY COMPOUND EYE Reviewed

    Y SHIMAZAKI, E EGUCHI

    VISION RESEARCH   33 ( 2 )   155 - 163   1993.1

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    The metabolism of 3-hydroxyretinoids in the cytosol of the compound eyes of a species of butterfly, Papilio xuthus, was investigated. The cytosol was found to contain 25-30% of the total 3-hydroxy-retinal and 70-82% of the total 3-hydroxyretinol in the eye. These percentages of 3-hydroxyretinoids in the cytosol were found to be constant regardless of whether the eyes are light-adapted or dark-adapted. 3-Hydroxyretinal can be newly synthesized in the cytosol of light-adapted eves. Blue light specifically increases the amount of 11-cis and all-trans 3-hydroxyretinal ca 2.5 and 1.8 times respectively, compared to pre-irradiation. When 3-hydroxyretinal was synthesized, 3-hydroxyretinol was decreased or disappeared in the cytosol. When retinol (non-native chemical) was added to the cytosol, it was converted into retinal. This result indicates that an oxidative system exists in the compound eye which can convert 3-hydroxyretinol to 3-hydroxyretinal.

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  • CHANGES IN RHABDOM VOLUMES OF ISOLATED COMPOUND EYES OF THE CRAB, HEMIGRAPSUS-SANGUINEUS - A STUDY IN CORRELATION WITH A CIRCADIAN-RHYTHM Reviewed

    E EGUCHI, Y SHIMAZAKI, T SUZUKI

    ZOOLOGICAL SCIENCE   8 ( 3 )   453 - 460   1991.6

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    As is known from the literature, the intact compound eyes of the grapsid crab, Hemigrapsus sanguineus, show clear circadian changes in rhabdom sizes even in constant darkness.
    In order to identify the location controlling the circadian changes in rhabdom sizes, we incubated isolated compound eyes (distal to the basement membranes) and eye-stalks (compound eye with optic ganglions) for 6 to 8 hr in physiological saline at 20-degrees-C under a LD 12:12 light regime and in continuous darkness (DD). The rhabdom sizes were compared at different times using the electron microscope. There were no significant differences in rhabdom sizes between isolated eye-stalks and compound eyes at each time examined during a day. This indicates that optic ganglions do not directly participate in regulations of rhabdom sizes. The isolated compound eyes showed significant decreases in rhabdom sizes at the subjective dawn under DD. This fact indicates that the breakdown of rhabdoms was endogenously controlled by the biological clock within the retina. However, no distinct increases of rhabdom sizes in the isolated compound eyes were observed at the subjective dusk under DD.

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Presentations

  • ミクロ2次元電気泳動法により分離されたネイティブ酵素の3次元電気泳動法の構築

    青木もえ, 佐藤朱莉, 宮本葵, 島崎洋次

    日本分析化学会第73年会2024年9月12日(名古屋)  2024.9 

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    Event date: 2024.9

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  • 卵白由来のリゾチームとオボトランスフェリン複合体の分離とその納豆菌に対する抗菌活性制御

    石河桜季, 榎本信也, 島﨑洋次

    第84回分析化学会討論会  2024.5 

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  • ミクロ2次元電気泳動法で分離された酵素-トランスフェリン複合体の溶出とその機能解析

    井上真帆, 榎本信也, 島﨑洋次

    日本分析化学会第72年会  2023.9 

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    Event date: 2023.9

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  • 私と電気泳動「電気泳動でタンパク質の機能を視る」 Invited

    島崎洋次

    第74回日本電気泳動学会学術集会  2023.5 

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  • 第62回日本電気泳動学会 学会賞(児玉賞)受賞講演「非変性条件の2次元電気泳動による天然酵素および複合体の分離と機能解析」 Invited

    島崎洋次

    第74回日本電気泳動学会学術集会  2023.5 

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  • 非変性条件の2次元ゲル電気泳動法によるネイティブタンパク質の分離分析法の展望と課題

    O島崎洋次, 福家麗

    第72回日本電気泳動学会シンポジウム パネリスト、11月2日(水)Web  2022.11 

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    Event date: 2022.11

    Language:Japanese   Presentation type:Symposium, workshop panel (nominated)  

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  • 2次元ゲル電気泳動で分離されたタンパク質超分子の分析法の検討

    O島崎洋次, 中尾香琳

    日本分析化学会第71年会  2022.9 

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  • Electrophoretic extraction of protein complexes after separation and detection by a combinational method of non-denaturing electrophoresis and reversible staining

    2022.7 

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  • 等電点電気泳動分離·溶出されたリゾチーム超分子の機能制御法の検討

    島崎洋次, 塚野鈴, 籔隼大

    日本分析化学会第70年会  2021.9 

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  • 非変性等電点電気泳動分離したタンパク質複合体の溶出法の検討とその特性分析

    島崎洋次, 籔隼大, 塚野鈴

    日本電気泳動学会第72回総会  2021.7 

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  • 非変性条件の等電点電気泳動により単離されたインタクトのリゾチームの酵素による活性変化

    籔隼大, 永田健一郎, 島崎洋次

    第71回日本電気泳動学会総会 web開催(東京)  2020.11 

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  • 色素結合型タンパク質のネイティブ電気泳動分離とその活性解析

    井上蒼士, 足利諒, 池内晴佳, 中丸ひかり, 島崎洋次

    2019年日本化学会中国四国支部大会 徳島大会  2019.11 

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  • 非変性条件の等電点電気泳動法による卵白リゾチームのインタクト分離溶出法の検討

    o島崎洋次, 藤村建之介

    第77回分析化学討論会  2017.5 

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  • ミクロ非変性等電点電気泳動法と培養技術を組み合わせたリゾチーム複合体の活性解析

    高橋歩実, 中野令菜, 李海月, 島崎洋次

    第68回日本電気泳動学会総会  2017.11 

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  • 卵白中のリゾチーム複合体の電気泳動分離とその活性分析法の構築

    高橋歩実, O島﨑 洋次

    第78回分析化学討論会  2018.5 

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  • ニワトリとウズラ卵白リゾチーム存在状態の解析

    原田靖大, 井上涼香, 島﨑 洋次

    第69回日本電気泳動学会総会  2018.8 

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  • 生体酵素によるアミロイドβ凝集体の脱凝集過程分析法の構築

    川野莉沙, 中西文香, 福永隼大, 座古保, 島﨑 洋次

    2018年日本化学会中国四国支部大会(愛媛大会)  2018.11 

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  • ウズラ卵白タンパク質の大腸菌に対する抗菌活性分析法の開発

    原田靖大, 井上涼香, 島崎洋次

    2018年日本化学会中国四国支部大会(愛媛大会)  2018.11 

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  • 非変性条件アガロースゲル電気泳動法とコンゴーレッドによるアミロイドβ凝集体の分離分析法の構築

    島崎洋次, 川野莉沙, 足利諒, 座古保

    第70回日本電気泳動学会総会  2019.7 

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  • 種々色素とネイティブ電気泳動法の組み合わせによるタンパク質及びタンパク質凝集体のネイティブ分離分析法の検討

    O島崎洋次, 井上蒼士, 足利諒, 座古保

    日本分析化学会第68年会  2019.9 

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Awards

  • 令和6年度研究奨励賞

    2024.4   愛媛大学理学部  

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  • 第62回日本電気泳動学会 学会賞(児玉賞)

    2023.5   日本電気泳動学会   「非変性条件の2次元電気泳動による天然酵素およびその複合体の分離と機能解析」

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  • 令和5年度研究奨励賞

    2023.4   愛媛大学理学部  

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  • 令和4年度研究奨励賞

    2022.4   愛媛大学理学部  

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  • ベストレクチャー賞

    2021.4   愛媛大学理学部  

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  • 令和元度研究奨励賞

    2019.12   愛媛大学理学部  

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Research Projects

  • タンパク質の機能・構造とその糖鎖修飾の状態との関係を分析する新規電気泳動法の構築

    2024.4 - 2027.3

    日本学術振興会  科学研究費助成事業  基盤研究(C)

    島崎 洋次

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    Grant amount:\4680000 ( Direct Cost: \3600000 、 Indirect Cost:\1080000 )

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  • Construction of high resolution separation analysis and function control methods for natural supramolecules

    2021.4 - 2024.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

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    Authorship:Principal investigator 

    Grant amount:\4290000 ( Direct Cost: \3300000 、 Indirect Cost:\990000 )

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  • 標的タンパク質凝集体分析システムの構築

    2013.4 - 2016.3

    日本学術振興会  基盤研究C 

    島﨑 洋次

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    Authorship:Principal investigator  Grant type:Competitive

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  • Construction of a high-performance system to collect protein information by the combination of non-denaturing two-dimensional electrophoresis and mass spectrometry

    2006 - 2007

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    MANABE Takashi, SHIMAZAKI Yoji

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    Grant amount:\4060000 ( Direct Cost: \3700000 、 Indirect Cost:\360000 )

    A high-performance system to collect information on intact proteins and protein complexes was constructed combining non-denaturing micro two-dimensional gel electrophoresis (we named this type of 2-DE as Type-I micro 2-DE) and mass spectrometric assignment of the proteins, using human plasma as a model of complex protein mixtures. Information on intact proteins and protein complexes was firstly collected by assigning polypeptides in all the stained spots on the Type-I 2-DE gel by matrix-assisted laser desorption-ioninzation mass spectrometry (MALDI MS) and peptide mass fingerprinting. Secondly, using the same conditions of non-denaturing isoelectric focusing as the non-denaturing 2-DE, second dimension electrophoresis was run in the presence of sodium dodecyl sulfate (SDS) (we named this type of 2-DE as Type-II micro 2-DE) and again the polypeptides in all the stained spots were assigned by mass spectrometry. The comparisons between the results of polypeptide assignment provided information on non-covalent interactions between protein subunits and/or between different proteins, which should be crucial to exert the specific functions of the proteins or protein complexes. Thirdly, we developed a method to extract proteins from each stained spot on the Type-I micro 2-DE gel and analyze them using SDS-gel electrophoresis (third-dimension electrophoresis).The analysis of the stained bands on each lane of the SDS gel revealed the constituent polypeptides included in the stained spot, thus providing detailed information on the protein-protein interactions. Combining the results obtained by these three methods, together with the high-efficiency of the micro 2-DE system, we could collect information on proteins and protein complexes in human plasma.

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  • Analysis of protein-protein interactions in human plasma using non-denaturing two-dimensional electrophoresis and mass spectrometry

    2004 - 2005

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    MANABE Takashi, SHIMAZAKI Yoji

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    Grant amount:\3600000 ( Direct Cost: \3600000 )

    Protein-protein interactions between human plasma proteins have been detected by micro two-dimensional electrophoresis (2-DE), comparing the patterns obtained under non-denaturing conditions and those obtained under partially denaturing conditions. The protein spots on the 2-DE gels, 157 spots on a non-denaturing micro 2-DE gel and 175 spots on a partially denaturing micro 2-DE gel, were subjected to structural analysis by mass spectrometry. For mass spectrometric analysis, matrix assisted laser desorption-time of flight mass spectrometry (MALDI-TOF MS) and database search (peptide mass fingerprinting, PMF) were employed. Integrating the information obtained, it was ascertained that structural information on human plasma proteins, including their status of complex-formation, can be analyzed. Although for the moment most of the protein researchers are using 2-DE under denaturing conditions, present study revealed that 2-DE under non-denaturing conditions will become more important by the advance of mass spectrometric methods in protein analysis.

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  • 電気泳動法による水容性酵素の機能-構造一斎分析

    2002 - 2004

    日本学術振興会  若手研究(B) 

    島崎洋次

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    Grant type:Competitive

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  • Separation and structural analysis of IgG-binding minor proteins in human plasma

    2002 - 2003

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    MANABE Takashi, SHIMAZAKI Yoji

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    Grant amount:\3600000 ( Direct Cost: \3600000 )

    We have examined the origin of human plasma minor proteins which we found comparing the patterns of two-dimensional gel electrophoresis run under two different conditions of size-separation (second dimension electrophoresis) ; one in the absence of denaturing agents throughout the run and one in the presence of SDS during the size-separation electrophoresis. The minor proteins were analyzed by mass spectrometry, identification of proteins by peptide mass fingerprinting using matrix-assisted laser desorption ionization-time-of-flignt mass spectrometer (MALDI-TOF MS) and partial amino acid sequencing by mass-tag method using electrospray ionization tandem mass spectrometer (ESI-MS/MS). Further, we have developed a three-step electrophoresis technique which employ slab-agarose gels in the step of isoelectric focusing and showed that this is useful for the structural analysis of the minor proteins. The comparisons of the patterns obtained by using different conditions of two-dimensional electrophoresis, together with the structural analyses of the proteins on the patterns, will provide insights on the construction processes of functional protein complexes.

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  • Global analysis of structure and function of cytosal enzymes by usiong electrophoresis.

    2002

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    Grant type:Competitive

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  • Development of high-performance techniques for the separation and analysis of minor protein components in human plasma

    1999 - 2000

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    MANABE Takashi, SHIMAZAKI Yoji

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    Grant amount:\800000 ( Direct Cost: \800000 )

    In the course to analyze total proteins in human plasma and lymphocytes, we have used two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) since it has the best resolution for the analysis of proteins. However, most of the workers on total protein analysis are using 2-D PAGE in denaturing conditions, to obtain structural information of the polypeptides separated on the 2-D gels. However, ultimate aim of protein analysis must be the re-construction of protein functions in living cells or organs. For this purpose, we have been using 2-D PAGE in the absence of denaturants. In this research project, we proposed a combination of four 2-D PAGE techniques (Type-I, Type-II, Type-III and Type-IV) to correlate structural information of polypeptides (obtained by Type-IV 2-D PAGE) with information on protein functions (obtained by Type-I 2-D PAGE).
    Further, we developed new electrophoretic techniques of protein separation and recovery which overcome the shortage of conventional 2-D PAGE techniques. In conventional 2-D PAGE, after electrophoresis proteins are fixed on the slab gel, stained with a dye or silver nitrate, quantitated by an image analysis software installed in a microcomputer, and extracted from the gel piece for further structural analysis. Most of these procedures require manual operation and their automation is almost impossible. During 1996-1998, we have developed techniques of capillary electrophoresis for the separation of proteins. Capillary electrophoresis is characterized by on-column detection, on-column quantitation, and full-automation of the separation process. We established the conditions of capillary isoelectric focusing and capillary SDS electrophoresis and applied them for the separation of human plasma proteins. Then we extended these conditions of capillary electrophoresis aiming to establish high-performance techniques for protein separation and recovery. We have constructed several apparatus and devises for this purpose and we are evaluating their performance in the separation of minor protein components in human plasma.

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  • Develepment of high sensitivity and high resolution techniques for the analysis of myeloma proteins

    1997 - 1998

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    MANABE Takashi, SHIMAZAKI Yoji

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    Grant amount:\3200000 ( Direct Cost: \3200000 )

    We aimed to develop techniques to analyze human plasma mycloma proteins in high sensitivity and high resolution. Microscale two-dimensional gel clectrophoresis and capillary electrophoresis were the candidates, but we found that two-dimensional gel clectrophoresis requires many steps of manual handling to obtain the separation patterns and additional processes of image analysis arc necessary to quantitate each separated proteins. Then we examined two separation principles of capillary electrophoresis, capillary isoelectric focusing and capillary SDS elcetrophoresis, for the analysis of mycloma proteins. Electrophoretic conditions for high-resolution and high-sensitivity separation of human plasma proteins have been developed for the two separation principles of capillary electrophoresis. Employing the established separation conditions, normal human plasma proteins have been separated as about 60 peaks/shoulders within 60 minutes by capillary isoelectric focusing and as about 30 peaks/shoulders within 70 minutes by capillary SDS electrophoresis. Major plasma proteins and mycloma proteins can be identified and quantitated on-column during separation by their UV absorbance. Our results show that capillary isoelectric focusing and capillary SDS electrophoresis are quite effective for high performance separation and analysis of human plasma mycloma proteins, when the separation conditions we have established were employed.

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  • Development of protein analytical method using electrophoresis and mass spectorometry

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Teaching Experience (On-campus)

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Teaching Experience

  • Introduction of biology

    2022.6 Institution:Ehime University

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  • 分析化学II

    2020.4 Institution:愛媛大学

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  • 分析化学I

    2016 Institution:愛媛大学

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  • 新入生セミナーA

    Institution:愛媛大学

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  • 化学

    Institution:愛媛大学

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  • 科学リテラシー

    Institution:愛媛大学

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  • 生命科学実験

    Institution:愛媛大学

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  • 化学実験(基礎)

    Institution:愛媛大学

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  • 生命の不思議

    Institution:愛媛大学

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Social Activities

  • 愛媛グローバルサイエンスキャンパス (展開学習)

    Role(s): Lecturer

    愛媛大学  2022.10

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  • おもしろ科学コンテスト出題委員

    Role(s): Organizing member

    愛媛県教育委員会  2022.6 - 2022.11

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    Type:Other

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  • グローバルサイエンスキャンパス(基盤学習)

    Role(s): Lecturer

    科学技術振興機構、愛媛大学  2021.8

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    Type:Lecture

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  • おもしろ科学コンテスト出題委員

    Role(s): Organizing member

    愛媛県教育委員会  2021.7 - 2021.11

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    Type:Other

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  • 松山南高校スーパーサイエンスハイスクール運営指導委員会

    Role(s): Advisor

    愛媛県教育委員会  2021.4

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    Type:Research consultation

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  • グローバルサイエンスキャンパス(基盤学習)

    Role(s): Lecturer

    科学技術振興機構、愛媛大学  2020.9

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    Type:Seminar, workshop

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  • 第9回CSJ化学フェスタ2019

    Role(s): Planner, Organizing member

    日本化学会  2019.10

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    Type:Science festival

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  • グローバルサイエンスキャンパス(基盤学習)

    Role(s): Lecturer, Demonstrator

    科学技術振興機構、愛媛大学  2019.7

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    Type:Research consultation

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  • 化学グランプリ2019

    Role(s): Planner, Organizing member

    日本化学会  2019.7

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    Type:Certification seminar

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  • グロ-バルサイエンスキャンパス(基盤学習)

    Role(s): Lecturer, Demonstrator

    科学技術振興機構、愛媛大学  2018.10

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    Type:Research consultation

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