Updated on 2025/03/27

写真a

 
Abe Masato
 
Organization
Graduate School of Agriculture Department of Bioscience Associate Professor
Title
Associate Professor
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脂質の化学合成を行っています。特にリン脂質の合成を得意としており、近年は糖脂質やスフィンゴ脂質の合成にも着手しています。脂質の生理機能、特に生体膜における膜タンパク質との関わりに焦点を当てた構造活性相関研究を進めています。天然脂質が持つ、いまだ明らかにされていない機能を知ることを目的としています。また、有用な合成脂質を産み出すことも狙いの一つです。
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Degree

  • 博士(農学) ( 京都大学大学院農学研究科 )

Research Interests

  • cytochrome c

  • peroxidase

  • apoptosis

  • mitochondria

  • Liposomes

  • Organic synthesis

  • Cardiolipin

  • Phosphatidylcholine

  • Lipid

  • Biomembrane

Research Areas

  • Life Science / Bioorganic chemistry

Education

  • Kyoto University   Graduate school of agriculture   Division of applied life sciences

    2004.4 - 2007.3

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  • Kyoto University   Graduate school of agriculture   Division of applied life sciences

    2002.4 - 2004.3

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  • Kyoto University   Faculty of agriculture

    1998.4 - 2002.3

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Research History

  • Ehime University   Graduate School of Agriculture   Assosiate professor

    2018.4

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  • Kyoto University   Graduate School of Agriculture   Assistant Professor

    2009.9 - 2018.3

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  • Kyushu University   Institute for materials, chemistry and engineering   Post-doctoral fellow

    2009.4 - 2009.8

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  • Kyushu University   Institute for materials, chemistry and engineering   Post-doctoral fellow

    2008.4 - 2009.3

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  • Kyoto University   Graduate School of Agriculture   Post-doctoral fellow

    2007.4 - 2008.3

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  • Kyoto University   Graduate School of Agriculture   JSPS research fellow (DC2)

    2006.4 - 2007.3

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Professional Memberships

  • PESTICIDE SCIENCE SOCIETY OF JAPAN

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  • JAPAN SOCIETY FOR BIOSCIENCE, BIOTECHNOLOGY, AND AGROCHEMISTRY

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  • THE JAPANESE CONFERENCE ON THE BIOCHEMISTRY OF LIPIDS

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  • THE SOCIETY OF SYNTHETIC ORGANIC CHEMISTRY, JAPAN

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  • THE JAPANESE BIOCHEMICAL SOCIETY

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Committee Memberships

  • 日本農薬学会 農薬デザイン研究会   関西委員  

    2018.4 - 2019.3   

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  • 日本農薬学会編集事務局   編集幹事  

    2017.4 - 2019.3   

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  • 日本農芸化学会 若手シンポジウム   実行委員  

    2016.9 - 2017.3   

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  • 日本農芸化学会関西支部   会計幹事  

    2015.5 - 2017.5   

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  • 日本農芸化学会 若手シンポジウム   実行委員  

    2011.9 - 2012.3   

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Papers

  • Identification of a novel enzyme from E. pacifica that acts as an eicosapentaenoic 8R-LOX and docosahexaenoic 10R-LOX. International journal

    Sayaka Yuki, Aiko Uemura, Mayuka Hakozaki, Akira Yano, Masato Abe, Yoshihisa Misawa, Naomichi Baba, Hidetoshi Yamada

    Scientific reports   10 ( 1 )   20592 - 20592   2020.11

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    North Pacific krill (Euphausia pacifica) contain 8R-hydroxy-eicosapentaenoic acid (8R-HEPE), 8R-hydroxy-eicosatetraenoic acid (8R-HETE) and 10R-hydroxy-docosahexaenoic acid (10R-HDHA). These findings indicate that E. pacifica must possess an R type lipoxygenase, although no such enzyme has been identified in krill. We analyzed E. pacifica cDNA sequence using next generation sequencing and identified two lipoxygenase genes (PK-LOX1 and 2). PK-LOX1 and PK-LOX2 encode proteins of 691 and 686 amino acids, respectively. Recombinant PK-LOX1 was generated in Sf9 cells using a baculovirus expression system. PK-LOX1 metabolizes eicosapentaenoic acid (EPA) to 8R-HEPE, arachidonic acid (ARA) to 8R-HETE and docosahexaenoic acid (DHA) to 10R-HDHA. Moreover, PK-LOX1 had higher activity for EPA than ARA and DHA. In addition, PK-LOX1 also metabolizes 17S-HDHA to 10R,17S-dihydroxy-docosahexaenoic acid (10R,17S-DiHDHA). PK-LOX1 is a novel lipoxygenase that acts as an 8R-lipoxygenase for EPA and 10R-lipoxygenase for DHA and 17S-HDHA. Our findings show PK-LOX1 facilitates the enzymatic production of hydroxy fatty acids, which are of value to the healthcare sector.

    DOI: 10.1038/s41598-020-77386-3

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  • Isolation of isolactarane sesquiterpenes from a Phlebia tremellosa culture filtrate and their growth promotion effects on lettuce roots.

    Atsushi Ishihara, Chisaki Ashida, Naoki Ube, Masato Abe, Hidetaka Hiyoshi, Kazuto Umezu, Naoki Endo, Kozue Sotome, Nitaro Maekawa, Akira Nakagiri, Kumiko Osaki-Oka, Tsuyoshi Ichiyanagi, Kotomi Ueno

    Journal of pesticide science   44 ( 1 )   9 - 14   2019.2

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    The ethyl acetate extract of the culture filtrate of Phlebia tremellosa promoted elongation of the lateral roots of lettuce seedlings at 250 µg/mL. We purified two compounds that promote root elongation by using activity-guided chromatographic fractionation. On the basis of spectroscopic analyses, these compounds were identified to be isolactarane sesquiterpenes derived from the dehydrogenation of merulactone, which was previously isolated from the same species. We named the purified compounds phlelactones A and B. Phlelactones A and B promoted primary root elongation at 100-300 and 10-30 µg/mL and the elongation and formation of lateral roots at 300-1000 and 30-100 µg/mL, respectively.

    DOI: 10.1584/jpestics.D18-056

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  • Role of Acyl Chain Composition of Phosphatidylcholine in Tafazzin-Mediated Remodeling of Cardiolipin in Liposomes Reviewed

    Masato Abe, Yoshiki Sawada, Shinpei Uno, Shuhei Chigasaki, Masahide Oku, Yasuyoshi Sakai, Hideto Miyoshi

    BIOCHEMISTRY   56 ( 47 )   6268 - 6280   2017.11

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    Remodeling of the acyl chain compositions of cardiolipin (CL) species by the transacylase tafazzin is an important process for maintaining optimal mitochondrial functions. The results of mechanistic studies on the tafazzin-mediated transacylation from phosphatidylcholine (PC) to monolyso-CL (MLCL) in artificial lipid membranes are controversial. The present study investigated the role of the acyl chain composition of PC in the Saccharomyces cerevisiae tafazzin-mediated remodeling of CL by examining the structural factors responsible for the superior acyl donor ability of dipalmitoleoyl (16:1) PC over dipalmitoyl (16:0) PC. To this end, we synthesized systematic derivatives of dipalmitoleoyl PC; for example, the location of the cis double bond was migrated from the Delta 9-position toward either end of the acyl chains (the Delta 5- or Delta 13-position), the cis double bond in the sn-1 or sn-2 position or both, was changed to a trans form, and palmitoleoyl and palmitoyl groups were exchanged in the sn-1 and sn-2 positions, maintaining similar PC fluidities. Analyses of the tafazzin-mediated transacylation from these PCs to sn-2'-MLCL(18:1-18:1/18:1-OH) in the liposomal membrane revealed that tafazzin strictly discriminates the molecular configuration of the acyl chains of PCs, including their glycerol positions (sn-1 or sn-2); however, the effects of PC fluidity on the reaction may not be neglected. On the basis of the findings described herein, we discuss the relevance of the so-called thermodynamic remodeling hypothesis that presumes no acyl selectivity of tafazzin.

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  • Mechanism for Remodeling of the Acyl Chain Composition of Cardiolipin Catalyzed by Saccharomyces cerevisiae Tafazzin Reviewed

    Masato Abe, Yui Hasegawa, Masahide Oku, Yoshiki Sawada, Eriko Tanaka, Yasuyoshi Sakai, Hideto Miyoshi

    JOURNAL OF BIOLOGICAL CHEMISTRY   291 ( 30 )   15491 - +   2016.7

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    Remodeling of the acyl chains of cardiolipin (CL) is responsible for final molecular composition of mature CL after de novo CL synthesis in mitochondria. Yeast Saccharomyces cerevisiae undergoes tafazzin-mediated CL remodeling, in which tafazzin serves as a transacylase from phospholipids to monolyso-CL (MLCL). In light of the diversity of the acyl compositions of mature CL between different organisms, the mechanism underlying tafazzin-mediated transacylation remains to be elucidated. We investigated the mechanism responsible for transacylation using purified S. cerevisiae tafazzin with liposomes composed of various sets of acyl donors and acceptors. The results revealed that tafazzin efficiently catalyzes transacylation in liposomal membranes with highly ordered lipid bilayer structure. Tafazzin elicited unique acyl chain specificity against phosphatidylcholine (PC) as follows: linoleoyl (18:2) > oleoyl (18:1) = palmitoleoyl (16:1) >> palmitoyl (16:0). In these reactions, tafazzin selectively removed the sn-2 acyl chain of PC and transferred it into the sn-1 and sn-2 positions of MLCL isomers at equivalent rates. We demonstrated for the first time that MLCL and dilyso-CL have inherent abilities to function as an acyl donor to monolyso-PC and acyl acceptor from PC, respectively. Furthermore, a Barth syndrome-associated tafazzin mutant (H77Q) was shown to completely lack the catalytic activity in our assay. It is difficult to reconcile the present results with the so-called thermodynamic remodeling hypothesis, which premises that tafazzin reacylates MLCL by unsaturated acyl chains only in disordered non-bilayer lipid domain. The acyl specificity of tafazzin may be one of the factors that determine the acyl composition of mature CLin S. cerevisiae mitochondria.

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  • Bongkrekic Acid Analogue, Lacking One of the Carboxylic Groups of its Parent Compound, Shows Moderate but pH-insensitive Inhibitory Effects on the Mitochondrial ADP/ATP Carrier Reviewed

    Atsushi Yamamoto, Keisuke Hasui, Hiroshi Matsuo, Katsuhiro Okuda, Masato Abe, Kenji Matsumoto, Kazuki Harada, Yuya Yoshimura, Takenori Yamamoto, Kazuto Ohkura, Mitsuru Shindo, Yasuo Shinohara

    CHEMICAL BIOLOGY & DRUG DESIGN   86 ( 5 )   1304 - 1322   2015.11

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    Bongkrekic acid, isolated from Burkholderia cocovenenans, is known to specifically inhibit the mitochondrial ADP/ATP carrier. However, the manner of its interaction with the carrier remains elusive. In this study, we tested the inhibitory effects of 17 bongkrekic acid analogues, derived from the intermediates obtained during its total synthesis, on the mitochondrial ATP/ATP carrier. Rough screening of these chemicals, performed by measuring their inhibitory effects on the mitochondrial ATP synthesis, revealed that 4 of them, KH-1, KH-7, KH-16, and KH-17, had moderate inhibitory effects. Further characterization of the actions of these 4 analogues on mitochondrial function showed that KH-16 had moderate; KH-1 and KH-17, weak; and KH-7, negligible side effects of both permeabilization of the mitochondrial inner membrane and inhibition of the electron transport, indicating that only KH-7 had a specific inhibitory effect on the mitochondrial ADP/ATP carrier. Although the parental bongkrekic acid showed a strong pH dependency of its action, the inhibitory effect of KH-7 was almost insensitive to the pH of the reaction medium, indicating the importance of the 3 carboxyl groups of bongkrekic acid for its pH-dependent action. A direct inhibitory effect of KH-7 on the mitochondrial ADP/ATP carrier was also clearly demonstrated.

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  • Efficient Total Synthesis of Bongkrekic Acid and Apoptosis Inhibitory Activity of Its Analogues Reviewed

    Kenji Matsumoto, Masaki Suyama, Satoshi Fujita, Takuya Moriwaki, Yukiko Sato, Yoshifumi Aso, Satoshi Muroshita, Hiroshi Matsuo, Keishi Monda, Katsuhiro Okuda, Masato Abe, Hiroyuki Fukunaga, Arihiro Kano, Mitsuru Shindo

    CHEMISTRY-A EUROPEAN JOURNAL   21 ( 32 )   11590 - 11602   2015.8

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:WILEY-V C H VERLAG GMBH  

    Bongkrekic acid (BKA), isolated from the bacterium Burkholderia cocovenenans, is an inhibitor of adenine nucleotide translocator, which inhibits apoptosis, and is thus an important tool for the mechanistic investigation of apoptosis. An efficient total synthesis of BKA has been achieved by employing a three-component convergent strategy based on Kocienski-Julia olefination and Suzuki-Miyaura coupling. It is noteworthy that segmentB has been prepared as a new doubly functionalized coupling partner, which contributes to shortening of the number of steps. Torquoselective olefination with an ynolate has also been applied for the efficient construction of an unsaturated ester. Furthermore, it is revealed that 1-methyl-2-azaadamantane N-oxyl is an excellent reagent for final oxidation to afford BKA in high yield. Based on the total synthesis, several BKA analogues were prepared for structure-activity relationship studies, which indicated that the carboxylic acid moieties were essential for the apoptosis inhibitory activity of BKA. More easily available BKA analogues with potent apoptosis inhibitory activity were also developed.

    DOI: 10.1002/chem.201501304

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  • Syntheses of photoreactive cardiolipins for a photoaffinity labeling study Reviewed

    Masato Abe, Masaaki Nakano, Ayumi Kosaka, Hideto Miyoshi

    TETRAHEDRON LETTERS   56 ( 17 )   2258 - 2261   2015.4

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:PERGAMON-ELSEVIER SCIENCE LTD  

    The photoaffinity labeling technique using photoreactive cardiolipin (CL) is a powerful means for investigating the molecular mechanism of the formation of a specific cytochrome c-cardiolipin complex. Using phosphoramidite chemistry, we synthesized three photoreactive CLs, that possess an unstable diazirine ring at different positions; that is, the acyl chain in the sn-1 or sn-2 position and the central glycerol moiety. (C) 2015 Elsevier Ltd. All rights reserved.

    DOI: 10.1016/j.tetlet.2015.03.056

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  • Design and synthesis of conformationally constrained analogues of cis-cinnamic acid and evaluation of their plant growth inhibitory activity Reviewed

    Keisuke Nishikawa, Hiroshi Fukuda, Masato Abe, Kazunari Nakanishi, Yuta Tazawa, Chihiro Yamaguchi, Syuntaro Hiradate, Yoshiharu Fujii, Katsuhiro Okuda, Mitsuru Shindo

    PHYTOCHEMISTRY   96   223 - 234   2013.12

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    1-O-cis-Cinnamoyl-beta-D-glucopyranose is known to be one of the most potent allelochemical candidates and was isolated from Spiraea thunbergii Sieb by Hiradate et al. (2004), who suggested that it derived its strong inhibitory activity from cis-cinnamic acid, which is crucial for phytotoxicity. In this study, key structural features and substituent effects of cis-cinnamic acid (cis-CA) on lettuce root growth inhibition was investigated. These structure-activity relationship studies indicated the importance of the spatial relationship of the aromatic ring and carboxylic acid moieties. In this context, conformationally constrained cis-CA analogues, in which the aromatic ring and cis-olefin were connected by a carbon bridge, were designed, synthesized, and evaluated as plant growth inhibitors. The results of the present study demonstrated that the inhibitory activities of the five-membered and six-membered bridged compounds were enhanced, up to 0.27 mu M, and were ten times higher than cis-CA, while the potency of the other compounds was reduced. (C) 2013 Elsevier Ltd. All rights reserved.

    DOI: 10.1016/j.phytochem.2013.10.001

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  • Critical role of a methyl group on the gamma-lactone ring of annonaceous acetogenins in the potent inhibition of mitochondrial complex I Reviewed

    Naoto Kojima, Masato Abe, Yuki Suga, Kazufumi Ohtsuki, Tetsuaki Tanaka, Hiroki Iwasaki, Masayuki Yamashita, Hideto Miyoshi

    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS   23 ( 5 )   1217 - 1219   2013.3

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    C34-epi and C34-epi-C35-trifluoro analogues of solamin, a mono-THF annonaceous acetogenin, were synthesized. Their inhibitory activity, along with previously synthesized analogues (C35-fluoro, C35-difluoro, and C35-trifluorosolamins), against bovine mitochondrial NADH-ubiquinone oxidoreductase (complex I) was determined. The present study revealed that the methyl group on the gamma-lactone moiety is critical to the potent inhibition of complex I by natural acetogenins. (c) 2013 Elsevier Ltd. All rights reserved.

    DOI: 10.1016/j.bmcl.2013.01.018

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  • Antimycin A-like molecules inhibit cyclic electron transport around photosystem I in ruptured chloroplasts Reviewed

    Yoshichika Taira, Yuki Okegawa, Kazuhiko Sugimoto, Masato Abe, Hideto Miyoshi, Toshiharu Shikanai

    FEBS OPEN BIO   3   406 - 410   2013

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:ELSEVIER SCIENCE LONDON  

    Antimycin A(3) (AA) is used as an inhibitor of cyclic electron transport around photosystem I. However, the high concentrations of AA that are needed for inhibition have secondary effects, even in chloroplasts. Here, we screened for chemicals that inhibited ferredoxin-dependent plastoquinone reduction in ruptured chloroplasts at lower concentrations than those required for AA. We identified two AA-like compounds: AAL1 and AAL2. AAL1 likely shares an inhibitory site with AA, most probably in the PGR5-PGRL1 protein complex, and enhances O-2 evolution in photosystem II, most likely via an uncoupler-like effect. AAL1 and AAL2 are unlikely to penetrate intact leaves. In ruptured chloroplasts, AALs are superior to AA as inhibitors of cyclic electron transport. (C) 2013 The Authors. Published by Elsevier BM, on behalf of Federation of European Biochemical Societies. All rights reserved.

    DOI: 10.1016/j.fob.2013.09.007

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  • Substituent effects of cis-cinnamic acid analogues as plant growh inhibitors Reviewed

    Keisuke Nishikawa, Hiroshi Fukuda, Masato Abe, Kazunari Nakanishi, Tomoya Taniguchi, Takashi Nomura, Chihiro Yamaguchi, Syuntaro Hiradate, Yoshiharu Fujii, Katsuhiro Okuda, Mitsuru Shindo

    Phytochemistry   96   132 - 147   2013

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    1-O-cis-Cinnamoyl-β-d-glucopyranose is one of the most potent allelochemicals that has been isolated from Spiraea thunbergii Sieb by Hiradate et al. It derives its strong inhibitory activity from cis-cinnamic acid (cis-CA), which is crucial for phytotoxicity. By preparing and assaying a series of cis-CA analogues, it was previously found that the key features of cis-CA for lettuce root growth inhibition are a phenyl ring, cis-configuration of the alkene moiety, and carboxylic acid. On the basis of a structure-activity relationship study, the substituent effects on the aromatic ring of cis-CA were examined by systematic synthesis and the lettuce root growth inhibition assay of a series of cis-CA analogues having substituents on the aromatic ring. While ortho- and para-substituted analogues exhibited low potency in most cases, meta-substitution was not critical for potency, and analogues having a hydrophobic and sterically small substituent were more likely to be potent. Finally, several cis-CA analogues were found to be more potent root growth inhibitors than cis-CA. © 2013 Elsevier Ltd. All rights reserved.

    DOI: 10.1016/j.phytochem.2013.08.013

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  • Key structural features of cis-cinnamic acid as an allelochemical Reviewed

    Masato Abe, Keisuke Nishikawa, Hiroshi Fukuda, Kazunari Nakanishi, Yuta Tazawa, Tomoya Taniguchi, So-young Park, Syuntaro Hiradate, Yoshiharu Fujii, Katsuhiro Okuda, Mitsuru Shindo

    PHYTOCHEMISTRY   84   56 - 67   2012.12

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    1-O-cis-cinnamoyl-beta-D-glucopyranose is one of the most potent allelochemicals isolated from Spiraea thunbergii Sieb. It is suggested that it derives its strong inhibitory activity from cis-cinnamic acid, which is crucial for phytotoxicity. It was synthesized to confirm its structure and bioactivity, and also a series of cis-cinnamic acid analogues were prepared to elucidate the key features of cis-cinnamic acid for lettuce root growth inhibition. The cis-cyclopropyl analogue showed potent inhibitory activity while the saturated and alkyne analogues proved to be inactive, demonstrating the importance of the as-double bond. Moreover, the aromatic ring could not be replaced with a saturated ring. However, the 1,3-dienylcyclo-hexene analogue showed strong activity. These results suggest that the geometry of the C-C double bond between the carboxyl group and the aromatic ring is essential for potent inhibitory activity. In addition, using several light sources, the photostability of the cinnamic acid derivatives and the role of the C-C double bond were also investigated. (c) 2012 Elsevier Ltd. All rights reserved.

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  • Molecular Design, Synthesis, and Evaluation of Novel Potent Apoptosis Inhibitors Inspired from Bongkrekic Acid Reviewed

    Katsuhiro Okuda, Keisuke Hasui, Masato Abe, Kenji Matsumoto, Mitsuru Shindo

    CHEMICAL RESEARCH IN TOXICOLOGY   25 ( 10 )   2253 - 2260   2012.10

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    Bongkrekic acid (BKA) is an inhibitor of adenine nucleotide translocase (ANT). Since inhibition of ANT is connected to the inhibition of cytochrome c release from mitochondria, which then results in the suppression of apoptosis, it has been used as a tool for the mechanistic investigation of apoptosis. BKA consists of a long carbon chain with two asymmetric centers, a nonconjugated olefin, two conjugated dienes, three methyl groups, a methoxyl group, and three carboxylic acids. This complicated chemical structure has caused difficulties in synthesis, supply, and biochemical mechanistic investigations. In this study, we designed and synthesized more simple tricarboxylic acids that were inspired by the molecular structure of BKA. Their cytotoxicity and apoptosis-preventing activity in HeLa cells and the effect on the mitochondrial inner membrane potential (Delta Psi m) in HL-60 cells were then evaluated. All tested tricarboxylic acid derivatives including BKA showed little toxicity against HeLa cells. BKA and two of the synthesized derivatives significantly suppressed staurosporine (STS)-induced reductions in cell viability. Furthermore, STS-induced Delta Psi m collapse was significantly restored by pretreatment with BKA and a tricarboxylic acid derivative. Other derivatives, in which one of three carboxylic acids was esterified, exhibited potent toxicity, especially a derivative bearing a carbon chain of the same length as that of BKA. In conclusion, we have developed a new lead compound as an apoptosis inhibitor bearing three carboxylic acids connected with the proper length of a long carbon chain.

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  • Molecular Mechanisms for the Induction of Peroxidase Activity of the Cytochrome c-Cardiolipin Complex Reviewed

    Masato Abe, Ryota Niibayashi, Shinya Koubori, Ikuko Moriyama, Hideto Miyoshi

    BIOCHEMISTRY   50 ( 39 )   8383 - 8391   2011.10

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    Induction of the peroxidase activity of cytochrome c (cyt c) by cardiolipin (CL) and H(2)O(2) in mitochondria is suggested to be a key event in early apoptosis. Although electrostatic interaction between the positively charged cyt c and negatively charged CL is a predominant force behind the formation of a specific cyt c-CL complex and sequential induction of the peroxidase activity, molecular mechanisms of hydrophobic interactions involving the fatty acyl chains of CL remain to be investigated. To elucidate the function of the acyl chains, particularly the role of the double bond, we synthesized a variety of CL analogues and examined their peroxidase inducing activity. Irrespective of the number of double bonds in I the acyl chains, the peroxidase activity of cyt c induced by liposomes composed of 1,2-dioleoyl-sn-glycero-3-phosphatidylcholine (DOPC) and a different CL (9:1 molar ratio) was similar, except for that of 1,1',2,2'-tetrastearoylcardiolipin (TSCL, C18:0)-containing liposomes. The peroxidase inducing activity of TSCL-containing liposomes was 3-4-fold greater than that of other CL-containing liposomes. The, peroxidase activity induced by all CL-containing liposomes was much lower at high ionic strengths than that at low ionic strengths because of diminution of the electrostatic interaction. The peroxidase inducing effects of various CL-containing liposomes were related well to their ability to associate with cyt c. Thus, our results revealed that at low CL levels, the saturated acyl chain of CL is favorable for the activation of peroxidase activity of CL-bound cyt c and the proposed critical role of the, double bond is not a general feature of the cyt c-CL interaction. The polarity of the membrane surface of TSCL-containing liposomes was slightly, but significantly, lower than that of other CL-containing liposomes, suggesting that the higher activating ability of TSCL-containing liposomes may be due to a reduced level of hydration of the polar head region reflecting tighter packing of the fully saturated acyl chains. Moreover, using CL analogues in which a central glycerol head moiety was modified, we revealed that the natural structure of the head moiety is not critical for the formation of the active cyt c-CL complex. The effects of the CL content of the liposomal membrane on the cyt c-CL interaction are discussed.

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  • Bis-THF motif of acetogenin binds to the third matrix-side loop of ND1 subunit in mitochondrial NADH-ubiquinone oxidoreductase Reviewed

    Sayo Nakanishi, Masato Abe, Shuhei Yamamoto, Masatoshi Murai, Hideto Miyoshi

    BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS   1807 ( 9 )   1170 - 1176   2011.9

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:ELSEVIER SCIENCE BV  

    Natural acetogenins are among the most potent inhibitors of bovine heart mitochondrial NADH-ubiquinone oxidoreductase (complex I). Our photoaffinity labeling study suggested that the hydroxylated bis-THF ring moiety of acetogenins binds at "site A" in the third matrix-side loop connecting the fifth and sixth transmembrane helices in the ND1 subunit [Kakutani et al. (2010) Biochemistry 49, 4794-4803]. Nevertheless, since this proposition was led using a photoreactive Delta lac-acetogenin derivative, it needs to be directly verified using a natural acetogenin-type probe. We therefore conducted photoaffinity labeling using a photoreactive natural acetogenin mimic ([(125)I]diazinylated natural acetogenin, [1251]DANA), which has a small photolabile diazirine group, in place of a hydroxy group, attached to the bis-THF ring moiety. Analysis of the photocross-linked protein in bovine heart submitochondrial particles unambiguously revealed that [(125)I]DANA binds to the membrane subunit ND1 with high specificity. The photocross-linking was completely blocked in the presence of just a 5-fold excess of bullatacin, indicating that [(125)I]DANA is an excellent mimic of natural acetogenins and hence binds to the site that accommodates natural products. Careful examination of the fragmentation patterns of the crosslinked ND1 generated by different proteases and their combinations indicated that the cross-linked residue is predominantly located at the supposed site A in the third matrix-side loop. (C) 2011 Elsevier B.V. All rights reserved.

    DOI: 10.1016/j.bbabio.2011.05.012

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  • Bis-THF motif of acetogenin binds to the third matrix-side loop of ND1 subunit in mitochondrial NADH-ubiquinone oxidoreductase Reviewed

    S. Nakanishi, M. Abe, S. Yamamoto, M. Murai, H. Miyoshi

    Biochimica et Biophysica Acta - Bioenergetics   1807 ( 9 )   1170 - 1176   2011.9

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  • P-42 新規植物生長調整剤の開発を指向したシス桂皮酸の構造活性相関研究(ポスター発表の部)

    西川 慶祐, 安部 真人, 中西 一成, 谷口 智哉, 田澤 優太, 松尾 和真, 福田 洋, 朴 昭英, 平舘 俊太郎, 藤井 義晴, 新藤 充

    天然有機化合物討論会 天然有機化合物討論会講演要旨集   ( 53 )   607 - 612   2011.9

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    l -0-cis-Cinnamoyl-β-D-glucopyranose, an allelochemical isolated from Spiraea thunbergii, exhibits potent plant growth inhibitory activity. cis-Cinnamic acid is the essential portion structure of 1-0-cis-cinnamoyl-β-D-glucopyranose responsible for the growth inhibitory activity. cis-Cinnamic acid exhibited potent inhibitory activity against the elongation of lettuce roots, and the half maximal effective concentration (EC_<50>) of cis-cinnamic acid was 2.2 μM. In this project we adopted cis-cinnamic acid as a novel lead compound, and examined the structure-activity relationship of cis-cinnamic acid to develop the environmentally friendly agrochemical. Moreover, we synthesized the fluorescent probes of cis-cinnamic acid aiming at the clarification of the mechanism of the activity expression. At first, we synthesized 1-0-cis-cinnamoyl-β-D-glucopyranose by the Hanessian protocol, and the synthetic compound showed similar inhibitory activity (EC_<50> 6.4 μg/mL) with that of the natural product (EC_<50> 4.0 μg/rnL). Next, we synthesized the cis-cinnamic acid analogues, and evaluated the inhibitory activities on the elongation of lettuce roots. Some analogues were found to be more p

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  • Synthesis and characterization of photoaffinity probe of acetogenin, a strong inhibitor of mitochondrial complex I Reviewed

    Shuhei Yamamoto, Masato Abe, Sayo Nakanishi, Masatoshi Murai, Hideto Miyoshi

    TETRAHEDRON LETTERS   52 ( 24 )   3090 - 3093   2011.6

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    Acetogenins are valuable inhibitor probes to get an insight into the structural and functional properties of mitochondrial NADH-ubiquinone oxidoreductase (complex I). We synthesized a photoreactive acetogenin mimic ([(125)I]DANA) which retained a strong inhibitory activity. The preliminary photoaffinity labeling with bovine heart submitochondrial particles revealed that [(125)I]DANA binds to the ND1 subunit among 45 different subunits with high specificity. (C) 2011 Elsevier Ltd. All rights reserved.

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  • Concise procedure for the synthesis of cardiolipins having different fatty acid combinations Reviewed

    Masato Abe, Shigeki Kitsuda, Shunji Ohyama, Shinya Koubori, Masatoshi Murai, Hideto Miyoshi

    TETRAHEDRON LETTERS   51 ( 15 )   2071 - 2073   2010.4

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    Production of a wide variety of cardiolipin (CL) analogues is critical for studying molecular mechanism of diverse biological functions of CL in mitochondria. We describe a concise procedure for the synthesis of CL using a phosphoramidite approach, which allows for the production of diverse CL analogues bearing linoleic acid(s) at any position on the glycerol backbone. (C) 2010 Elsevier Ltd. All rights reserved.

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  • Synthesis of pyranicin and its deoxygenated analogues and their inhibitory action with bovine heart mitochondrial complex I Reviewed

    Shin-ichi Furuhata, Yasunao Hattori, Motonori Okajima, Hiroyuki Konno, Masato Abe, Hideto Miyoshi, Tetsuhisa Goto, Hidefumi Makabe

    TETRAHEDRON   64 ( 33 )   7695 - 7703   2008.8

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    Total synthesis of pyranicin and its deoxygenated analogues was achieved using Cl(2)Pd(CH(3)CN)(2) catalyzed diastereoselective cyclization of the allylic ester as the key step. The inhibitory activity of these compounds for mitochondrial NADH-ubiquinone oxicloreductase (complex I) was poorer than those of ordinary mono-THF acetogenins such as annonacin. (C) 2008 Elsevier Ltd. All rights reserved.

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  • Dynamic function of the spacer region of acetogenins in the inhibition of bovine mitochondrial NADH-ubiquinone oxidoreductase (complex I) Reviewed

    Masato Abe, Akina Kubo, Shuhei Yamamoto, Yoshinori Hatoh, Masatoshi Murai, Yasunao Hattori, Hidefumi Makabe, Takaaki Nishioka, Hideto Miyoshi

    BIOCHEMISTRY   47 ( 23 )   6260 - 6266   2008.6

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    Studies of the action mechanism of acetogenins, the most potent and structurally unique inhibitors of bovine heart mitochondrial complex I (NADH-ubiquinone oxidoreductase), are valuable in characterizing the inhibitor binding site in this enzyme. Our previous study deepened our understanding of the dynamic function of the spacer region of bis-THF acetogenins [Abe, M., et al. (2005) Biochemistry 44, 14898-14906] but, at the same time, posed new important questions. First, while the two toxophores (i.e., the hydroxylated THF and the gamma-lactone rings) span a distance shorter than that of the extended 13 carbon atoms [-(CH(2))(13)-], what is the apparent optimal length of the spacer for the inhibition of 13 carbon atoms? In other words, what is the functional role of the additional methylene groups? Second, why was the inhibitory potency of the mono-THF derivative, but not the bis-THF derivative, drastically reduced by hardening the spacer covering 10 carbon atoms into a rodlike shape [-CH(2)-(C C)(4)-CH(2)-]? This study was designed not only to answer these questions but also to further disclose the dynamic functions of the spacer. We here synthesized systematically designed acetogenins, including mono- and bis-THF derivatives, and evaluated their inhibitory effects on bovine complex I. With regard to the first question, we demonstrated that the additional methylenes enhance the hydrophobicity of the spacer region, which may be thermodynamically advantageous for bringing the polar gamma-lactone ring into the membrane-embedded segment of complex I. With regard to the second question, we observed that a decrease in the flexibility of the spacer region is more adverse to the action of the mono-THF series than that of the bis-THF series. As a cause of this difference, we suggest that for bis-THF derivatives, one of the two THF rings, being adjacent to the spacer, is capable of working as a pseudospacer to overcome the remarkable decrease in the conformational freedom and/or the length of the spacer. Moreover, using photoresponsive acetogenins that undergo drastic and reversible conformational changes with alternating UV-vis irradiation, we provided further evidence that the spacer region is free from steric congestion arising from the putative binding site probably because there is no receptor wall for the spacer region.

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  • Synthesis of pyranicin and its inhibitory action with bovine heart mitochondrial complex I Reviewed

    Yasunao Hattori, Shin-ichi Furuhata, Motonori Okajima, Hiroyuki Konno, Masato Abe, Hideto Miyoshi, Tetsuhisa Goto, Hidefumi Makabe

    ORGANIC LETTERS   10 ( 5 )   717 - 720   2008.3

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    Total synthesis of pyranicin was achieved using Cl(2)Pd(CH(3)CN)(2)-catalyzed diastereoselective cyclization of the allylic ester as the key step. The inhibitory activity of this compound for mitochondrial NADH-ubiquinone oxidoreductase (complex I) was slightly poorer than that of ordinary mono-THF acetogenins such as cis-solamin.

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  • Crucial structural factors and mode of action of polyene Amides as inhibitors for mitochondrial NADH-Ubiquinone oxidoreductase (Complex I) Reviewed

    Takehiko Yoshida, Masatoshi Murai, Masato Abe, Naoya Ichimaru, Toshiyuki Harada, Takaaki Nishioka, Hideto Miyoshi

    BIOCHEMISTRY   46 ( 36 )   10365 - 10372   2007.9

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    Natural antibiotic polyene amides such as myxalamides are potent inhibitors of mitochondrial complex I. Because of the significant instability of this series of compounds due to an extended pi-conjugation skeleton, a detailed characterization of their inhibitory action has not been performed. To elucidate the action mechanism as well as binding manner of polyene an-tides with complex 1, identification of the roles of each functional group in the inhibitory action is needed. We here synthesized a series of amide analogues and carried out structure-activity studies with bovine heart mitochondrial complex I. With respect to the left-hand portion, the natural pi-conjugation skeleton common to many natural products is not required for the inhibition and can be substituted with a simpler substructure such as a conjugated diene. The geometry and shape of the left-hand portion were shown to be important for the inhibition, suggesting that this portion may bind to a narrow hydrophobic pocket in the enzyme rather than merely partitioning into the lipid membrane phase. Concerning the right-hand portion of the inhibitor, the presence of the 2-methyl, amide NH, and (S)-1'-methyl groups was crucial for the activity, suggesting that both methyl groups neighboring the amide group finely adjust the hydrogen-bonding ability of the amide group. in contrast, modifications of the 2'-OH group did not significantly influence the activity, suggesting that the role of this functional group is not to serve as a hydrogen bond donor to the enzyme but to act as a hydrophilic anchor directing the right-hand portion at or near the membrane surface. Detailed characterization of the action mechanism indicated that the polyene amides share a common binding domain with other complex I inhibitors, though their binding position (or manner) within the domain may differ considerably from that of other inhibitors.

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  • Synthesis, determination of the absolute configuration of tonkinelin, and inhibitory action with bovine heart mitochondrial complex I Reviewed

    Yasunao Hattori, Hiroyuki Konno, Masato Abe, Hideto Miyoshi, Tetsuhisa Goto, Hidefumi Makabe

    BIOORGANIC & MEDICINAL CHEMISTRY   15 ( 8 )   3026 - 3031   2007.4

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    The first synthesis of two possible diastereomers of tonkinelin was achieved. By comparison of the optical rotation of two candidates of tonkinelin and the natural compound, it is suggested that the absolute configuration of natural tonkinelin is likely to be (17S,18S). The inhibitory activity of these compounds was examined with bovine heart mitochondrial NADH-ubiquinone oxidoreductase. These compounds showed remarkably weak inhibitory activity compared to ordinary acetogenins such as bullatacin. (c) 2007 Elsevier Ltd. All rights reserved.

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  • Synthesis of murisolin, (15R, 16R, 19R, 20S)-murisolin A, and (15R, 16R, 19S, 20S)-16,19-cis-murisolin and their inhibitory action with bovine heart mitochondrial complex I Reviewed

    Yasunao Hattori, Yuka Kimura, Aki Moroda, Hiroyuki Konno, Masato Abe, Hideto Miyoshi, Tetsuhisa Goto, Hidefumi Makabe

    CHEMISTRY-AN ASIAN JOURNAL   1 ( 6 )   894 - 904   2006.12

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    The asymmetric total synthesis of murisolin, (15R, 16R, 19R, 20S)-murisolin A, and (15R, 16R, 19S, 20S)-16,19-cis-murisolin was performed by using an epoxy alcohol as a versatile chiral building block for synthesizing the stereoisomers of mono-THF annonaceous acetogenins. The inhibitory activity of these murisolin compounds was examined with bovine heart mitochondrial complex I, and they showed almost the same activity.

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  • Mode of inhibitory action of Delta lac-acetogenins, a new class of inhibitors of bovine heart mitochondrial complex I Reviewed

    Masatoshi Murai, Naoya Ichimaru, Masato Abe, Takaaki Nishioka, Hideto Miyoshi

    BIOCHEMISTRY   45 ( 32 )   9778 - 9787   2006.8

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    We have revealed that Delta lac-acetogenins, a new class of inhibitors of bovine heart mitochondrial complex I (NADH-ubiquinone oxidoreductase), act differently from ordinary inhibitors such as rotenone and piericidin A [Ichimaru et al. (2005) Biochemistry 44, 816-825]. Since a detailed study of these unique inhibitors might provide new insight into the terminal electron transfer step of the enzyme, we further characterized their inhibitory action using the most potent Delta lac-acetogenin derivative (compound 1). Unlike ordinary complex I inhibitors, 1 had a dose-response curve for inhibition of the reduction of exogenous short-chain ubiquinones that was difficult to explain with a simple bimolecular association model. The inhibitory effect of 1 on ubiquinol-NAD(+) oxidoreductase activity (reverse electron transfer) was much weaker than that on NADH oxidase activity (forward electron transfer), indicating a direction-specific effect. These results suggest that the binding site of 1 is not identical to that of ubiquinone and the binding of 1 to the enzyme secondarily (or indirectly) disturbs the redox reaction of ubiquinone. Using endogenous and exogenous ubiquinone as an electron acceptor of complex I, we investigated the effect of 1 in combination with different ordinary inhibitors on the superoxide production from the enzyme. The results indicated that the level of superoxide production induced by 1 is significantly lower than that induced by ordinary inhibitors probably because of fewer electron leaks from the ubisemiquinone radical to molecular oxygen and that the site of inhibition by 1 is downstream of that by ordinary inhibitors. The unique inhibitory action of hydrophobic Delta lac-acetogenins may be closely associated with the dynamic function of the membrane domain of complex I.

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  • Function of the alkyl side chains of Delta lac-acetogenins in the inhibitory effect on mitochondrial complex I (NADH-ubiquinone oxidoreductase) Reviewed

    N Ichimaru, M Abe, M Murai, M Senoh, T Nishioka, H Miyoshi

    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS   16 ( 13 )   3555 - 3558   2006.7

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    We synthesized a series of Alac-acetogenins in which the two alkyl side chains were systematically modified, and examined their inhibitory effect on bovine heart mitochondrial complex I (NADH-ubiquinone oxidoreductase). The results revealed that the physicochemical properties of the side chains, such as the balance of hydrophobicity and the width (or bulkiness) of the chains, are important structural factors for a potent inhibitory effect of amphiphilic Alac-acetogenins. This is probably because such properties decide the precise location of the hydrophilic bis-THF ring moiety in the enzyme embedded in the inner mitochondrial membrane. (c) 2006 Elsevier Ltd. All rights reserved.

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  • Synthesis of photolabile Delta lac-acetogenin for lphotoaffinity labeling of mitochondrial complex I Reviewed

    M Murai, N Ichimaru, M Abe, T Nishioka, H Miyoshi

    JOURNAL OF PESTICIDE SCIENCE   31 ( 2 )   156 - 158   2006

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    Delta lac-Acetogenins are a novel type of inhibitor acting at the terminal electron transfer step of mitochondrial NADH-ubiquinone oxidoreductase (complex 1). To identify the binding site of Delta lac-acetogenins by photoaffinity labeling, we synthesized a photolabile Delta lac-acetogenin that possesses a biotin probe to enable the detection and the isolation of the labeled peptide without the use of a radioisotope. The photolabile Delta lac-acetogenin synthesized in this study elicited potent inhibition of bovine heart mitochondrial complex 1 at the nanomolar level. (c) Pesticide Science Society of Japan.

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  • Dynamic function of the alkyl spacer of acetogenins in their inhibitory action with mitochondrial complex I (NADH-ubiquinone oxidoreductase) Reviewed

    M Abe, M Murai, N Ichimaru, A Kenmochi, T Yoshida, A Kubo, Y Kimura, A Moroda, H Makabe, T Nishioka, H Miyoshi

    BIOCHEMISTRY   44 ( 45 )   14898 - 14906   2005.11

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    Studies on the inhibitory mechanism of acetogenins, the most potent inhibitors of mitochondrial functional complex I (NADH-ubiquinone oxidoreductase), are useful for elucidating the structural and features of the terminal electron transfer step of this enzyme. Previous studies of the structure-activity relationship revealed that except for the alkyl spacer linking the two toxophores (i.e., the hydroxylated THF and the gamma-lactone rings), none of the multiple functional groups of these inhibitors is essential for potent inhibition. To elucidate the function of the alkyl spacer, two sets of systematically selected analogues were synthesized. First, the length of the spacer was varied widely. Second, the local flexibility of the spacer was specifically reduced by introducing multiple bond(s) into different regions of the spacer. The optimal length of the spacer for inhibition was approximately 13 carbon atoms. The decrease in the strength of the inhibitory effect caused by elongating the spacer from 13 carbons was much more drastic than that caused by shortening. Local flexibility in a specific region of the spacer was not important for the inhibition. These observations indicate that the active conformation,of the spacer is not an extended form, and is not necessarily restricted to a certain rigid shape. Moreover, an analogue in which a spacer covering 10 carbon atoms was hardened into a rodlike shape still maintained a potent inhibitory effect. Our results strongly suggest that the spacer portion is free from steric congestion arising from the putative binding site probably because there is no cavity-like binding site for the spacer portion. The manner of acetogenin binding to the enzyme may not be explained by a simple "key and keyhole" analogy.

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  • Synthesis of non-THF analogs of acetogenin toward simplified mimics Reviewed

    D Fujita, N Ichimaru, M Abe, M Murai, T Hamada, T Nishioka, H Miyoshi

    TETRAHEDRON LETTERS   46 ( 34 )   5775 - 5779   2005.8

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    Acetogenin analogs in which the bis-adjacent THF ring was replaced with an enantioselectively synthesized 1,2-cyclo-pentanediol bis-ether skeleton were synthesized to obtain simplified mimics, and their inhibitory effect on mitochondrial NADH-ubiquinone oxidoreductase (complex I) was examined. The results clearly demonstrate that the 1,2-cyclopentanediol bis-ether motif can substitute for the bis-THF ring while maintaining very potent inhibitory activity at the nanomolar level. (c) 2005 Elsevier Ltd. All rights reserved.

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  • Synthesis and inhibition mechanism of Delta lac-acetogenins, a novel type of inhibitor of bovine heart mitochondrial complex I Reviewed

    N Ichimaru, M Murai, M Abe, T Hamada, Y Yamada, S Makino, T Nishioka, H Makabe, A Makino, T Kobayashi, H Miyoshi

    BIOCHEMISTRY   44 ( 2 )   816 - 825   2005.1

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    We have synthesized Delta1ac-acetogenins that are new acetogenin mimics possessing two n-alkyl tails without an alpha,beta-unsaturated gamma-lactone ring and suggested that their inhibition mechanism may be different from that of common acetogenins [Hamada et al. (2004) Biochemistry 43, 3651-3658]. To elucidate the inhibition mechanism of Delta1ac-acetogenins in more detail, we carried out wide structural modifications of original Delta1ac-acetogenins and characterized the inhibitory action with bovine heart mitochondrial complex I. In contrast to common acetogenins, both the presence of adjacent bis-THF rings and the stereochemistry around the hydroxylated bis-THF rings are important structural factors required for potent inhibition. The inhibitory potency of a derivative possessing an n-butylphenyl ether structure (compound 7) appeared to be superior to that of the original Delta1ac-acetogenins and equivalent to that of bullatacin, one of the most potent natural acetogenins. Double-inhibitor titration of steady-state complex I activity showed that the extent of inhibition of compound 7 and bullatacin is not additive, suggesting that the binding sites of the two inhibitors are not identical. Competition tests using a fluorescent ligand indicated that the binding site of compound 7 does not overlap with that of other complex I inhibitors. The effects of compound 7 on superoxide production from complex I are also different from those of other complex I inhibitors. Our results clearly demonstrate that Delta1ac-acetogenins are a novel type of inhibitor acting at the terminal electron-transfer step of bovine complex I.

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  • Total synthesis of cis-solamin and its inhibitory action with bovine heart mitochondrial complex I Reviewed

    H Makabe, Y Hattori, Y Kimura, H Konno, M Abe, H Miyoshi, A Tanaka, T Oritani

    TETRAHEDRON   60 ( 47 )   10651 - 10657   2004.11

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    A convergent total synthesis of cis-solamin (1a) and its diastereomer (1b) was accomplished. A key reaction of this approach was the use of VO(acac)(2)-catalyzed diastereoselective epoxidation of (Z)-bis-homoallylic alcohol 3 followed by spontaneous cyclization for the cis-THF ring formation. By comparison of the optical rotation of the two possible diastereomers, it is suggested that the absolute configuration of natural cis-solamin is 1a. Inhibitory action of synthetic 1a and 1b with bovine heart mitochondrial complex I are reported. (C) 2004 Elsevier Ltd. All rights reserved.

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  • Direct evidence for the interaction of stigmatellin with a protonated acidic group in the bc(1) complex from Saccharomyces cerevisiae as monitored by FTIR difference spectroscopy and C-13 specific labeling Reviewed

    M Ritter, H Palsdottir, M Abe, W Mantele, C Hunte, H Miyoshi, P Hellwig

    BIOCHEMISTRY   43 ( 26 )   8439 - 8446   2004.7

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    In this study a combined electrochemical and FTIR spectroscopic approach was applied to monitor the binding of stigmatellin, a Q(o) site inhibitor of the cytochrome bc(1) complex from Saccharomyces cerevisiae. Natural stigmatellin A induced clear shifts in the redox-induced FTIR difference spectra. For data interpretation a stigmatellin derivative (UST) with the conjugated trienes replaced by an aliphatic tail was synthesized, and the carbonyl group shown in crystal structures to interact with His181, the [2Fe-2S] ligand of the Rieske, was specifically C-13 labeled. Electrochemically induced FTIR difference spectra of the inhibitors in CH3OD were obtained and revealed signals characteristic for the oxidized and reduced forms of the labeled and unlabeled compounds. On the basis of signals from the inhibitors alone, the binding of the inhibitor to the bc(1) complex was monitored. Direct evidence for the interaction of the carbonyl group with the protein was provided by the observed shift of the v(C=O) vibrational mode of about 10 cm(-1). In addition, redox-dependent reorganizations of the protein were identified, including protonation changes of acidic residues at 1746 and 1734 cm(-1). The conformational changes observed upon inhibitor binding are discussed with respect to the crystal structures and proposed mechanistic models [Hunte, C., Koepke, J., Lange, C., Rossmanith, T., and Michel, H. (2000) Structure 8, 669-684; Palsdottir, H., Lojero, C. G., Trumpower, B. L., and Hunte, C. (2003) J. Biol. Chem. 278, 31303-31311].

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  • Synthesis and inhibitory action of novel acetogenin mimics with bovine heart mitochondrial complex I Reviewed

    T Hamada, N Ichimaru, M Abe, D Fujita, A Kenmochi, T Nishioka, K Zwicker, U Brandt, H Miyoshi

    BIOCHEMISTRY   43 ( 12 )   3651 - 3658   2004.3

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    Studies on the inhibition mechanism of acetogenins, the most potent inhibitors of complex I, are useful to elucidate the structural and functional features of the terminal electron-transfer step of this enzyme. We synthesized acetogenin mimics that possess two alkyl tails without a gamma-lactone ring, named Deltalac-acetogenin, and examined their inhibitory action on bovine heart mitochondrial complex I. Unexpectedly, the Deltalac-acetogenin carrying two n-undecanyl groups (compound 3) elicited very potent inhibition comparable to that of bullatacin. The inhibitory potency of compound 3 markedly decreased with shortening the length of either or both alkyl tails, indicating that symmetric as well as hydrophobic properties of the inhibitor are important for the inhibition. Both acetylation and deoxygenation of either or both of two OH groups adjacent to the tetrahydrofuran (THF) rings resulted in a significant decrease in inhibitory potency. These structural dependencies of the inhibitory action of Deltalac-acetogenins are in marked contrast to those of ordinary acetogenins. Double-inhibitor titration of steady-state complex I activity showed that inhibition of compound 3 and bullatacin are not additive, though the inhibition site of both inhibitors is downstream of iron-sulfur cluster N2. Our results indicate that the mode of inhibitory action of Deltalac-acetogenins differs from that of ordinary acetogenins. Therefore, Deltalac-acetogenins can be regarded as a novel type of inhibitor acting on the terminal electron-transfer step of complex I.

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  • Essential structural features of acetogenins: role of hydroxy groups adjacent to the bis-THF rings Reviewed

    M Abe, A Kenmochi, N Ichimaru, T Hamada, T Nishioka, H Miyoshi

    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS   14 ( 3 )   779 - 782   2004.2

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    The presence of two hydroxy groups adjacent to the THF ring(s) is a common structural feature of natural acetogenins. To elucidate the role of each hydroxy group in the inhibitory action of acetogenins, we synthesized three acetogenin analogues which lack either or both of the hydroxy groups, and investigated their inhibitory activities with bovine heart mitochondrial complex I. Our results indicate that the presence of either of the two hydroxy groups sufficiently sustains a potent inhibitory effect. (C) 2003 Elsevier Ltd. All rights reserved.

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  • Synthesis and mitochondrial complex I inhibition of dihydroxy-cohibin A, non-THF annonaceous acetogenin analogue Reviewed

    H Konno, N Hiura, H Makabe, M Abe, H Miyoshi

    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS   14 ( 3 )   629 - 632   2004.2

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    To elucidate the inhibitory action of acetogenins, we synthesized an acetogenin derivative which possesses tetraol in place of the tetrahydrofuran ring and examined its inhibitory activity against bovine heart mitochondrial complex I. Our results indicate that these hydroxy groups are an essential structural factor though it is not effective as bis-THF hydroxy groups combination. (C) 2003 Elsevier Ltd. All rights reserved.

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  • Synthesis and mitochondrial complex I inhibition of dihydroxy-cohibin A, non-THF annonaceous acetogenin analogue. Reviewed

    Konno H, Hiura N, Makabe H, Abe M, Miyoshi H

    Bioorganic & medicinal chemistry letters   14 ( 3 )   629 - 632   2004.2

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  • Synthesis of two possible diastereomers of reticulatain-1 Reviewed

    H Makabe, A Miyawaki, R Takahashi, Y Hattori, H Konno, M Abe, H Miyoshi

    TETRAHEDRON LETTERS   45 ( 5 )   973 - 977   2004.1

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    A convergent synthesis of two possible diastereomers of reticulatain-1 (1a and 1b) was accomplished. Comparison of the specific optical rotations of 1a and 1b did not allow for the strict determination of the absolute configuration. However, bis-(R)MTPA esters of la and lb showed a clear difference in chemical shifts in the (1) H NMR spectra. If the bis-(R)-MTPA ester of natural reticulatain-1 (1) is available, the absolute configuration of 1 will be determined. Inhibitory action of these compounds was examined with bovine heart mitochondrial complex I. Both compounds showed almost the same activity. (C) 2003 Elsevier Ltd. All rights reserved.

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  • Synthesis of C-13-labeled ubiquinone-acetogenin hybrid inhibitors of mitochondrial complex I Reviewed

    N Ichimaru, M Abe, A Kenmochi, T Hamada, T Nishioka, H Miyoshi

    JOURNAL OF PESTICIDE SCIENCE   29 ( 2 )   127 - 129   2004

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    Natural acetogenins are the most potent inhibitors of mitochondrial complex I. By synthesizing a ubiquinone-acetogenin hybrid inhibitor (named Q-acetogenin), we previously showed that a gamma-lactone ring of acetogenins is completely substitutable with a ubiquinone ring. In this study, to open a new experimental approach to the study of acetogenin-complex I interaction, we report procedures for synthesizing (13)G-labeled Q-acetogenins, wherein the carbonyl carbon at the 1- or 4-position of the ubiquinone ring is specifically C-13-labeled.

    DOI: 10.1584/jpestics.29.127

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  • Synthesis and inhibitory activity of ubiquinone-acetogenin hybrid inhibitor with bovine mitochondrial complex I Reviewed

    H Yabunaka, M Abe, A Kenmochi, T Hamada, T Nishioka, H Miyoshi

    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS   13 ( 14 )   2385 - 2388   2003.7

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    To elucidate the inhibitory action of acetogenins, the most potent inhibitors of mitochondrial complex I, we synthesized an acetogenin analogue which possesses a ubiquinone ring (i.e., the physiological substrate of complex I) in place of the alpha,beta-unsaturated gamma-lactone ring of natural acetogenins, and named it Q-acetogenin. Our results indicate that the gamma-lactone ring of acetogenins is completely substitutable with the ubiquinone ring. This fact is discussed in light of the inhibitory action of acetogenins. (C) 2003 Elsevier Science Ltd. All rights reserved.

    DOI: 10.1016/S0960-894X(03)00439-6

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  • Synthetic study of mixed acetal for the production of bioactive lipids

    田中遼太郎, 石橋洋平, 伊東信, 安部真人

    日本農芸化学会大会講演要旨集(Web)   2020   2020

  • Synthetic study of phosphatidyl serin bearing poly unsaturated fatty acid

    多田大輝, 三澤嘉久, 馬場直道, 安部真人

    日本農芸化学会大会講演要旨集(Web)   2020   2020

  • Development of physiological function analysis based on chemical synthesis of phospholipids

    安部真人

    日本農芸化学会大会講演要旨集(Web)   2020   2020

  • Identification of a novel 8R-lipoxygenase and its application synthesis of protectin D1.

    結城彩花, 植村亜衣子, 箱崎真友佳, 矢野明, 馬場直道, 三澤嘉久, 安部真人, 山田秀俊

    日本農芸化学会大会講演要旨集(Web)   2020   2020

  • シス桂皮酸の植物生長調節作用-植物の方向認識を阻害する研究-

    安部真人

    日本農薬学会誌   45 ( 1 )   2020

  • エーテル型リン脂質プラズマローゲン類の合成

    安部真人, 田中遼太郎

    日本農芸化学会大会講演要旨集(Web)   2019   2019

  • 脂質分子が繋ぐ生命と環境

    安部真人

    農薬環境科学研究   ( 27 )   2019

  • 合成リゾカルジオリピン類縁体のトランスアシラーゼtafazzinに対する阻害効果

    安部真人, 千ヶ崎修平, 奥公秀, 阪井康能, 三芳秀人

    脂質生化学研究   61   2019

  • ミトコンドリア膜リン脂質カルジオリピンのリモデリング機構

    安部真人, 澤田良樹, 奥公秀, 阪井康能, 三芳秀人

    脂質生化学研究   60   84   2018.5

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  • 酵母tafazzinによるカルジオリピンのリモデリング反応の基質特異性

    安部真人, 澤田良樹, 宇野晋平, 千ヶ崎修平, 奥公秀, 阪井康能, 三芳秀人

    日本農芸化学会大会講演要旨集(Web)   2018   ROMBUNNO.3A14a08 (WEB ONLY)   2018.3

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  • ミトコンドリア膜表在性リモデリング酵素タファジンにおけるエーテル型PCの基質認識

    安部真人, 千ヶ崎修平, 奥公秀, 阪井能義, 三芳秀人

    日本農芸化学会中四国支部講演会講演要旨集(Web)   52nd   2018

  • 光反応性ホスファチジルコリンを用いた脂質抱合型apoA-Iの標識手法の確立

    藤本和希, 木村泰久, 安部真人, 三芳秀人, 植田和光, 植田和光

    日本農芸化学会大会講演要旨集(Web)   2018   2018

  • リン脂質ホスファチジルコリンの脱メチル化類縁体の合成研究

    安部真人, 辻諄人, 三芳秀人

    日本農芸化学会中四国支部講演会講演要旨集(Web)   51st   2018

  • カルジオリピン含有リポソームを用いた酵母由来tafazzinの基質特異性の解明

    安部真人, 長谷川結以, 奥公秀, 澤田良樹, 田中絵里子, 阪井康能, 三芳秀人

    生体膜と薬物の相互作用シンポジウム講演要旨集   38th   110‐111   2016.11

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  • Saccharomyces cerevisiae由来tafazzinによるカルジオリピンのトランスアシル化反応の基質特異性

    安部真人, 長谷川結以, 奥公秀, 澤田良樹, 田中絵里子, 阪井康能, 三芳秀人

    日本生化学会大会(Web)   89th   ROMBUNNO.1T18‐01(1P‐374) (WEB ONLY) - 01(1P   2016.9

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  • 出芽酵母tafazzinによるカルジオリピンのリモデリング機構に関する研究

    長谷川裕以, 安部真人, 奥公秀, 阪井康能, 三芳秀人

    日本農芸化学会大会講演要旨集(Web)   2016   2B077 (WEB ONLY)   2016.3

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  • リン脂質カルジオリピンのシトクロムcに対する結合部位の同定

    ABE MASATO, TANABE YUKIE, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集(Web)   2015   2D12A06 (WEB ONLY)   2015.3

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  • リン脂質カルジオリピンのシトクロムcへの結合部位の同定

    KOSAKA AYUMI, TANABE YUKIE, ABE MASATO, MIYOSHI HIDETO

    日本農薬学会大会講演要旨集   39th   95   2014.3

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  • リン脂質カルジオリピンのシトクロムcに対する結合部位の同定

    KOSAKA AYUMI, TANABE YUKIE, ABE MASATO, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集(Web)   2014   3A05P05 (WEB ONLY)   2014.3

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  • C35位を改変したバンレイシ科アセトゲニン誘導体のヒトがん細胞増殖抑制活性

    HIRATA SHOYA, KOJIMA NAOTO, SATOMI JUN'ICHIRO, KANO MASAFUMI, OTSUKI KAZUFUMI, TANAKA TETSUAKI, YAMORI TAKAO, ABE MASATO, MIYOSHI HIDETO, IWASAKI HIROKI, YAMASHITA MASAYUKI

    日本薬学会年会要旨集(CD-ROM)   134th   ROMBUNNO.29AMS-094S   2014

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  • ボンクレキン酸に基づいた新規アポトーシス阻害剤の合成

    藤田聡, 松本健司, 陶山正樹, 森脇拓也, 福永幸裕, 奥田勝博, 安部真人, 狩野有宏, 新藤充

    日本薬学会九州支部大会講演要旨集   31st   2014

  • ボンクレキン酸誘導体の合成

    藤田聡, 松本健司, 陶山正樹, 森脇拓也, 福永幸裕, 奥田勝博, 安部真人, 狩野有宏, 新藤充

    有機合成化学セミナー講演予稿集   31st   2014

  • ボンクレキン酸を起点とするアポトーシス阻害剤の設計と活性評価

    松本健司, 陶山正樹, 森脇拓也, 蓮井啓佑, 福永幸裕, 奥田勝博, 安部真人, 狩野有宏, 新藤充

    天然有機化合物討論会講演要旨集(Web)   55th   2013

  • C35‐フッ素化solaminの合成とミトコンドリア複合体I阻害活性

    KANO MASABUMI, KOJIMA NAOTO, SUGA TOMOKI, OTSUKI KAZUFUMI, TANAKA TETSUAKI, ABE MASATO, MIYOSHI HIDETO, IWASAKI HIROKI, YAMASHITA MASAYUKI

    日本薬学会年会要旨集(CD-ROM)   133rd   ROMBUNNO.28AMA-033S   2013

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  • B312 Synthesis and mode of action study of photoreactive acetogenin.

    Abe Masato, Nakanishi Sayo, Yamamoto Shuhei, Miyoshi Hideto

    ( 37 )   127 - 127   2012.3

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  • ミトコンドリア複合体‐Iにおけるアセトゲニン結合部位の同定

    NAKANISHI SAYO, ABE MASATO, MURAI MASATOSHI, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集(Web)   2012   3A05P14 (WEB ONLY)   2012.3

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  • ミトコンドリア複合体‐Iにおけるアセトゲニンの結合部位の同定

    NAKANISHI SAYO, ABE MASATO, YAMAMOTO SHUHEI, MURAI MASATOSHI, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集   2011   189   2011.3

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  • 光親和性ユビキノンプローブの合成と標的タンパク質の解析

    HABU SAYAKO, YOKOYAMA MINORU, MURAI MASATOSHI, ABE MASATO, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集   2011   177   2011.3

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  • ミトコンドリア複合体‐Iに作用する光反応性フェンピロキシメートの結合部位の同定

    MURAI MASATOSHI, SAKIYAMA NAOTO, SHIRAISHI YUSUKE, ABE MASATO, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集   2011   189   2011.3

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  • カルジオリピン類の合成によるシトクロムcとの分子間相互作用の解析

    SHIMBAYASHI RYOTA, KOBORI SHIN'YA, MORIYAMA IKUKO, ABE MASATO, MURAI MASATOSHI, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集   2011   177   2011.3

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  • ミトコンドリア複合体‐Iに作用する光反応性フェンピロキシメートの結合部位の同定(II)

    SAKIYAMA NAOTO, MURAI MASATOSHI, SHIRAISHI YUSUKE, ABE MASATO, MIYOSHI HIDETO

    日本農薬学会大会講演要旨集   36th   92   2011.2

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  • 光反応性アセトゲニンの合成と作用機構研究

    ABE MASATO, NAKANISHI SAYO, YAMAMOTO SHUHEI, MURAI MASATOSHI, MIYOSHI HIDETO

    日本農薬学会大会講演要旨集   36th   93   2011.2

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  • ミトコンドリア複合体‐Iに作用する光反応性フェンピロキシメートの結合部位の同定(I)

    MURAI MASATOSHI, SAKIYAMA NAOTO, SHIRAISHI YUSUKE, ABE MASATO, MIYOSHI HIDETO

    日本農薬学会大会講演要旨集   36th   91   2011.2

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  • Molecular Mechanism for Induction of Peroxidase Activity of Cytochrome c-Cardiolipin Complex

    ABE MASATO, NIIBAYASHI RYOTA, KOBORI SHIN'YA, MORIYAMA IKUKO, MIYOSHI HIDETO

    生化学   ROMBUNNO.2T8P-13   2011

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  • 新規な光合成サイクリック電子伝達阻害剤の探索

    TAIRA SUMITAKA, OKEKAWA TOMOKI, SUGIMOTO KAZUHIKO, ABE MASATO, MIYOSHI HIDETO, SHIKAUCHI TOSHIHARU

    日本植物生理学会年会要旨集   52nd   187   2011

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  • 機能性ユビキノンプローブの合成とユビキノン結合性タンパク質の探索

    YOKOYAMA MINORU, HABU SAYAKO, MURAI MASATOSHI, ABE MASATO, MIYOSHI HIDETO

    日本農芸化学会関西支部講演会講演要旨集   468th   7   2011

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  • 第16回 ヨーロッパ生体エネルギー会議(EBEC)に参加して(シンポジア)

    安部 真人

    Journal of pesticide science   35 ( 4 )   591 - 592   2010.11

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    DOI: 10.1584/jpestics.35.591

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  • 光反応性アセトゲニンの合成と作用機構研究

    NAKANISHI SAYO, YAMAMOTO SHUHEI, ABE MASATO, MURAI MASATOSHI, MIYOSHI HIDETO

    日本農芸化学会関西支部講演会講演要旨集   466th   53   2010.10

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  • モノテトラヒドロフラン型バンレイシ科アセトゲニンの系統的な合成とテトラヒドロピラン環を有するアセトゲニンの合成研究

    MAKABE HIDEFUMI, HATTORI YASUNAO, OASA MAYU, SHIMAMOTO YASUHIRO, KONNO HIROYUKI, ABE MASATO, MIYOSHI HIDETO

    天然有機化合物討論会講演要旨集   52nd ( 52 )   421 - 426   2010.9

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    1. Synthesis of mono-THF acetogenin The asymmetric synthesis of murisolin (1), (15R,16R,19R,20S)-murisolin A (2), (15R,16R,19S,20S)-16,19-cis-murisolin (3), solamin (4), cis-solamin (5), annonacin (6) was performed using an epoxy alcohol 11 as a versatile chiral building block for synthesizing the stereoisomers of mono-THF annonaceous acetogenins. 2. Synthetic studies of THP containing acetogenins Synthesis of pyranicin (7), 10-deoxypyranicin (8), 4,10-dideoxypyranicin (9) was achieved using Pd(II)-catalyzed diastereoselective cyclization of the allylic ester as the key step. Synthesis of THP moiety of mucocin (10) is currently underway. 3. The inhibitory activity of mitochondrial complex I The inhibitory activity of mitochondrial comlex I of mono-THF acetogenins showed almost same activities. This observation suggested that the stereochemistry around the THF ring(s) is of minor importance for the activity. As to the inhibitory activity of pyranicin (7) and its dehydrogenated analogues, the activity was poorer than that of ordinary mono-THF acetogenins.

    DOI: 10.24496/tennenyuki.52.0_421

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  • Synthesis of cardiolipin analogues bearing a biophysical probe at any position of the four acyl chains Reviewed

    Masato Abe, Shunya Koubori, Hideto Miyoshi

    BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS   1797   19 - 19   2010.7

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    DOI: 10.1016/j.bbabio.2010.04.076

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  • 光反応性アセトゲニンの合成と作用機構研究

    ABE MASATO, YAMAMOTO SHUHEI, MURAI MASATOSHI, MIYOSHI HIDETO

    日本農薬学会大会講演要旨集   35th   45   2010.4

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  • 広汎なカルジオリピン類の有機合成と生理活性評価

    ABE MASATO, OYAMA SHUNJI, KOBORI SHIN'YA, MORIYAMA IKUKO, MURAI MASATOSHI, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集   2010   16   2010.3

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  • ミトコンドリア複合体‐I阻害剤Δlac‐アセトゲニンの結合部位の解明

    MURAI MASATOSHI, KAKUTANI NOBUYUKI, SAKIYAMA NAOTO, ABE MASATO, MIYOSHI HIDETO

    日本生体エネルギー研究会討論会講演要旨集   36th   134 - 135   2010

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  • ANT阻害剤ボンクレキン酸の誘導体合成と構造活性相関

    松尾啓史, 安部真人, 狩野有宏, 丸山厚, 新藤充

    日本薬学会年会要旨集   129th ( 2 )   2009

  • ボンクレキン酸のアポトーシス阻害効果に関する構造活性相関研究

    安部真人, 佐藤幸子, 松尾啓史, 狩野有宏, 丸山厚, 新藤充

    日本農芸化学会大会講演要旨集   2009   2009

  • パラジウム触媒による環化反応を用いたpyranicinとspectamine Aの合成研究

    MORI YOSHIHIRO, HATTORI YASUNAO, FURUHATA SHIN'ICHI, KONNO HIROYUKI, ABE MASATO, MIYOSHI HIDETO, MAKABE HIDEFUMI

    天然有機化合物討論会講演要旨集   50th   599 - 604   2008.9

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  • ミトコンドリア複合体‐I阻害剤アセトゲニン類の作用機構研究 bis‐THF体とmono‐THF体の比較から

    ABE MASATO, YAMAMOTO SHUHEI, MAKABE HIDEFUMI, NISHIOKA TAKAAKI, MIYOSHI HIDETO

    日本農薬学会大会講演要旨集   33rd   39   2008.3

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  • ミトコンドリア複合体‐I阻害剤アセトゲニン類のスペーサー部の機能

    ABE MASATO, YAMAMOTO SHUHEI, NISHIOKA TAKAAKI, MAKABE HIDEFUMI, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集   2008   170   2008.3

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  • Pyranicinの合成とミトコンドリアcomplex Iの阻害活性

    FURUHATA SHIN'ICHI, HATTORI YASUNAO, KONNO HIROYUKI, ABE MASATO, MIYOSHI HIDETO, GOTO TETSUHISA, MAKABE HIDEFUMI

    日本農芸化学会大会講演要旨集   2008   17   2008.3

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  • ミトコンドリア複合体―I阻害剤アセトゲニン類のスペーサー部の機能

    ABE MASATO, HATO YOSHIMICHI, MAKABE HIDEFUMI, NISHIOKA TAKAAKI, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集   2007   259   2007.3

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  • Synthesis of (17S, 18S)- and (17R, 18R)-tonkinelin and their inhibitory action with bovine heart mitochondorial complex I.

    Hattori, Y, Konno, H, Abe, M, Miyoshi, H, Goto, T, Makabe, H

    Bioorg. Med. Chem.   15   3026 - 3031   2007

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  • Inhibition mechanism of mitochondrial complex I inhibitor acetogenins : a role of the alkyl spacer

    ABE Masato, KUBO Akina, NISHIOKA Takaaki, MIYOSHI Hideto

    31   66 - 66   2006.3

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  • 新規アセトゲニンmimics(Δlac‐アセトゲニン)の合成と作用機構研究

    ICHIMARU NAOYA, MURAI MASATOSHI, ABE MASAHITO, SENO MAI, MAKABE HIDEFUMI, NISHIOKA TAKAAKI, MIYOSHI HIDEHITO

    日本農芸化学会大会講演要旨集   2006   6   2006.3

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  • ミトコンドリア複合体‐I阻害剤アセトゲニン類の阻害機構研究:スペーサー部の機能

    ABE MASAHITO, MURAI MASATOSHI, ICHIMARU NAOYA, YOSHIDA TAKEHIKO, KUBO AKINA, NISHIOKA TAKAAKI, MIYOSHI HIDEHITO

    日本農芸化学会大会講演要旨集   2006   5   2006.3

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  • Δ‐lacアセトゲニンの複合体‐Iに対する作用機構研究

    MURAI MASATOSHI, ICHIMARU NAOYA, ABE MASAHITO, NISHIOKA TAKAAKI, MIYOSHI HIDEHITO

    日本農芸化学会大会講演要旨集   2006   6   2006.3

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  • Δlac‐アセトゲニン類の合成と作用機構研究

    ICHIMARU NAOYA, MURAI MASATOSHI, ABE MASATO, HAMADA TSUYOSHI, MAKINO SAE, MAKABE HIDEFUMI, NISHIOKA TAKAAKI, MIYOSHI HIDETO

    日本農芸化学会大会講演要旨集   2005   13   2005.3

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  • ミトコンドリア複合体‐I阻害剤アセトゲニンの阻害機構研究:スペーサー部の機能

    ABE MASATO, MURAI MASATOSHI, ICHIMARU NAOYA, YOSHIDA TAKEHIKO, NISHIOKA TAKAAKI, MIYOSHI HIDEHITO

    日本農芸化学会関西支部講演会講演要旨集   2005   103   2005

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  • 新規アセトゲニンmimics(Δlac‐アセトゲニン)の合成と作用機構研究

    ICHIMARU NAOYA, MURAI MASATOSHI, ABE MASATO, HAMADA TAKESHI, MAKINO SAE, MAKABE HIDEFUMI, NISHIOKA TAKAAKI, MIYOSHI HIDEHITO

    日本農芸化学会関西支部講演会講演要旨集   2005   104   2005

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  • モノテトラヒドロフラン型アセトゲニンアナログの合成とミトコンドリア活性

    KONNO HIROYUKI, FUJII NOBUTAKA, MAKABE HIDEFUMI, KIMURA YUKA, MIYOSHI HIDETO, ABE MASATO

    反応と合成の進歩シンポジウム講演要旨集   30th   238 - 239   2004.9

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  • Synthesis and inhibitory action of novel acetogenin mimics with bovine mitochondrial complex I

    H Miyoshi, T Hamada, N Ichimaru, M Abe, D Fujita, A Kenmochi, T Nishioka, K Zwicker, U Brandt

    BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS   1658   138 - 138   2004

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  • <sup>13</sup>C標識stigmatellinの合成とFTIR分光法によるミトコンドリア複合体‐IIIの動態研究

    MIYOSHI HIDETO, ABE MASATO, HELLWING P

    日本農芸化学会大会講演要旨集   2003   269   2003.3

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Presentations

  • ANT阻害剤ボンクレキン酸の誘導体合成と構造活性相関

    安部真人

    日本薬学会第129年会  2009 

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  • ボンクレキン酸のアポトーシス阻害効果に関する構造活性相関研究

    安部真人

    日本農芸化学会2009年度大会  2009 

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  • cis-桂皮酸の構造活性相関研究(1) -オレフィンと芳香環上の置換基の効果-

    安部真人

    日本農芸化学会2009年度大会  2009 

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  • 光反応性アセトゲニンの合成と作用機構研究

    安部真人

    日本農芸化学会2010年度関西支部大会  2010 

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  • カルジオリピンの合成に基づくシトクロムc‐カルジオリピン複合体形成の分子機構解明

    安部真人, 新林良太, 幸堀伸哉, 三芳秀人

    日本生体エネルギー研究会討論会講演要旨集  2010 

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  • 広汎なカルジオリピン類の有機合成と生理活性評価

    安部真人

    日本農芸化学会2010年度大会  2010 

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  • 細胞毒性を有するボンクレキン酸部分構造の構造活性相関

    安部真人

    第47回化学関連支部合同九州大会  2010 

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  • 強いアレロパシー活性を示すシス桂皮酸の構造活性相関研究

    安部真人

    日本薬学会第131年会  2011 

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  • 2A03 Synthesis of photoaffinity labeling probe of natural acetogenins

    Abe Masato, Yamamoto Shuhei, Murai Masatoshi, Miyoshi Hideto

    2010.4 

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  • アポトーシスを制御する有機小分子

    安部真人

    第五回物質合成シンポジウム  2009 

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  • ミトコンドリア複合体‐Ⅰにおけるアセトゲニン類の結合部位の同定

    安部真人

    日本農芸化学会2011年度大会(東日本大震災により中止)  2011 

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  • カルジオリピン類の合成によるシトクロムcとの分子間相互作用の解析

    安部真人

    日本農芸化学会2011年度大会(東日本大震災により中止)  2011 

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  • 光親和性ユビキノンプローブの合成と標的タンパク質の解析

    安部真人

    日本農芸化学会2011年度大会(東日本大震災により中止)  2011 

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  • ミトコンドリア複合体-Iに作用する光反応性フェンピロキシメートの結合部位の同定(I)

    安部真人

    日本農薬学会第36回大会(東日本大震災)により中止  2011 

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  • 光反応性アセトゲニンの合成と作用機構研究

    安部真人

    日本農薬学会第36回大会(東日本大震災)により中止  2011 

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  • B312 Synthesis and mode of action study of photoreactive acetogenin.

    Abe Masato, Nakanishi Sayo, Yamamoto Shuhei, Miyoshi Hideto

    2012.3 

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  • A301 Identification of the binding site of photolabile fenpyroximate analogue in bovine mitochondrial complex I (I).

    Murai Masatoshi, Sakiyama Naoto, Shiraishi Yusuke, Abe Masato, Miyoshi Hideto

    2011.2 

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  • アポトーシス阻害剤ボンクレキン酸および誘導体の収束型効率合成

    安部真人

    有機合成化学協会 第20回若手のためのセミナー  2008 

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  • A208 ミトコンドリア複合体-I阻害剤アセトゲニン類の作用機構研究 : bis-THF体とmono-THF体の比較から

    安部真人

    講演要旨集  2008.3 

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  • ミトコンドリア複合体-I 阻害剤アセトゲニン類のスペーサー部の機能

    安部真人

    日本農芸化学会2008年度大会  2008 

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  • ボンクレキン酸の抗アポトーシス作用と細胞毒性

    安部真人

    日本ケミカルバイオロジー学会第4回年会  2009 

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  • ボンクレキン酸及び誘導体の効率合成とアポトーシス阻害活性

    安部真人

    日本化学会第89春季年会  2009 

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Research Projects

  • Functional characterization of nascent HDL generation

    2022.4 - 2026.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

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    Grant amount:\17160000 ( Direct Cost: \13200000 、 Indirect Cost:\3960000 )

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  • Comprehensive analysis of bioactive proteins using phospholipid peroxide as a chemical probe

    2022.4 - 2025.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

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    Grant amount:\4290000 ( Direct Cost: \3300000 、 Indirect Cost:\990000 )

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  • Derivation of anti-inflammatory and antithrombotic seeds based on the development of enzyme cascade synthesis method for oxylipins

    2022 - 2024

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Fund for the Promotion of Joint International Research (Fostering Joint International Research (A))

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    Grant amount:\15600000 ( Direct Cost: \12000000 、 Indirect Cost:\3600000 )

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  • 脂質分子動態に基づく骨格筋再生機構の全容解明

    2021.10 - 2024.3

    日本学術振興会  科学研究費助成事業  国際共同研究加速基金(国際共同研究強化(B))

    原 雄二, 安部 真人, 神谷 厚輝, 北嶋 康雄, 鈴木 美希, 塩見 晃史

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    Grant amount:\19110000 ( Direct Cost: \14700000 、 Indirect Cost:\4410000 )

    骨格筋線維の再生過程において、筋幹細胞(筋衛星細胞)の分裂に端を発した筋芽細胞への運命決定や、筋芽細胞の細胞融合は必須な現象である。しかしこれらの各素過程、特に膜リン脂質分子群の挙動を制御し、筋幹細胞および融合体(筋管)の形成に至る機構は未だ明らかではない。これまでの研究(Nature Commun., 2018等)に端を発し、本申請では「脂質二重層間におけるリン脂質の非対称分布(リン脂質配向性)の変化が、最上流因子として細胞分裂・細胞融合、ひいては筋線維の再生を制御する」という作業仮説の実証・深化を目指す 。特にProf. Kobayashi(ストラスブール大学)との共同研究「超解像イメージング解析による筋再生過程での脂質分子の動態解析」を通じ、脂質分子動態を基軸とした骨格筋線維の再生機構の全容解明を目指す。筋再生機構は老化や各種疾患に伴う筋萎縮治療法の構築に直接つながることから、超高齢化社会を迎えた我が国において、本研究遂行による「筋恒常性維持を介した健康長寿の達成」は極めて重要であると言える。
    本研究におて、①細胞融合の起点となるリン脂質分子動態の検出・同定、②筋幹細胞(筋衛星細胞)でのリン脂質動態の役割解明、および③脂質配向性を基軸とした現象の、分子~生体レベルでの理解深化、という実験を行う。当該年度では、COVID-19等の影響もあり、海外への渡航は出来なかったこともあり、次年度以降の国際共同研究に向け、準備を進めている。

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  • Elucidation of mechanism for cytochrome c dessociation based on fine synthesis of phospholipid cardiolipin peroxide

    2019.4 - 2022.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

    ABE Masasto

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    Grant amount:\4420000 ( Direct Cost: \3400000 、 Indirect Cost:\1020000 )

    Phospholipid cardiolipin, which is involved in both mitochondrial-mediated ATP production and apoptosis, releases cytochrome c upon induction to peroxide under oxidative stress conditions. However, in the cardiolipin peroxidation reaction, the component leading to the release of cytochrome c has not been identified because the secondary oxidation proceeds immediately after the cardiolipin peroxide is generated. Therefore, in this study, we aimed to achieve total synthesis of cardiolipin peroxide and to realize interaction analysis with cytochrome c. So far, we have completed selective chemical synthesis of two isomers of cardiolipin peroxide and succeeded in overcoming the most difficult task. Currently, further evaluation of affinity with cytochrome c is underway.

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  • 脂質の多様な機能を司るオルガネラ間相互作用と脂質輸送メカニズムの解明

    2018.4 - 2020.3

    日本学術振興会  科学研究費補助金 基盤研究(B) 

    和田 元

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  • Application of synthetic lipids to lipid biosynthesis mutants reveals functions of photosynthetic membrane lipids

    2017.6 - 2021.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Challenging Research (Exploratory)

    Kobayashi Koichi

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    Grant amount:\6370000 ( Direct Cost: \4900000 、 Indirect Cost:\1470000 )

    Although typical cells contain a myriad of glycerolipid molecular species having different molecular structures, why there are so many glycerolipid molecular species within a cell remains unknown. In this study, we investigated the functions of phosphatidylglycerol (PG) molecules, the only phospholipid in cyanobacteria, by taking advantage of the nature of cyanobacterial cells that can uptake PG in growth medium and use it for growth.
    Abe’s group at Ehime University produced various PG analogs carrying fatty acids with different chain length and number and position of double bonds with different linkage mode. Kobayashi’s group at Osaka Prefecture University utilized those PG analogs in a cyanobacteria mutant deficient in PG biosynthesis and revealed that PG analogs carrying saturated fatty acid groups induce chlorophyll breakdown in the PG-biosynthesis mutant. We further showed that PG molecules strongly affect the degradation of light-harvesting antenna complexes.

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  • 変異体を用いた新規合成脂質スクリーニングが解き明かす光合成膜脂質の機能

    2017.6 - 2020.3

    日本学術振興会  科学研究費補助金 挑戦的研究(萌芽) 

    小林 康一

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  • Elucidation of molecular mechanism of autophagy and lipid metabolism supporting soundness of organelles

    2016.4 - 2019.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

    Oku Masahide, ABE Masato

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    Grant amount:\4810000 ( Direct Cost: \3700000 、 Indirect Cost:\1110000 )

    The aim of this project was to elucidate the molecular mechanism underlying maintenance of organelles functionality. In particular, the mitochondrion emitting reactive-oxygen species (ROS) and the lipid droplet, a major storage site of neutral lipids, were chosen as the objects of the studies on the lipid dynamics and autophagy system.
    Through this project, the substrate specificity of a yeast enzyme termed tafazzin was revealed as a determinant of the composition of fatty acid moiety within the mitochondrial lipid, cardiolipin. As with the lipid droplet, the role of an autophagy-related protein, Atg8, was uncovered in counteracting degradation of neutral lipids through lipolysis. In addition, a new type of autophagy (microautophagy) was discovered that is dependent on the so-called ESCRT proteins.

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  • Elucidaton of molecular mechanism of remodeling for cardiolipin

    2014.4 - 2017.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

    Masato Abe, OKU Masathide

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    Authorship:Principal investigator  Grant type:Competitive

    Grant amount:\5070000 ( Direct Cost: \3900000 、 Indirect Cost:\1170000 )

    Remodeling of the acyl chains of cardiolipin (CL) is responsible for final molecular composition of mature CL after de novo CL synthesis in mitochondria. In light of the diversity of the acyl compositions of mature CL between different organisms, the mechanism underlying tafazzin-mediated transacylation remains to be elucidated. We investigated the mechanism responsible for transacylation using purified S. cerevisiae tafazzin with liposomes composed of various sets of acyl donors and acceptors. The results revealed that tafazzin efficiently catalyzes transacylation in liposomal membranes with highly ordered lipid bilayer structure. Tafazzin elicited unique acyl chain specificity against phosphatidylcholine (PC) as follows: linoleoyl (18:2) > oleoyl (18:1) _ palmitoleoyl (16:1) >> palmitoyl (16:0). In these reactions, tafazzin selectively removed the sn-2 acyl chain of PC and transferred it into the sn-1 and sn-2 positions of MLCL isomers at equivalent rates.

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  • Molecular mechanisms of the formation and the dissociation of the cytochrome c-cardiolipin complex

    2012.4 - 2014.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Young Scientists (B)  Grant-in-Aid for Young Scientists (B)

    ABE Masato

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    Authorship:Principal investigator  Grant type:Competitive

    Grant amount:\4680000 ( Direct Cost: \3600000 、 Indirect Cost:\1080000 )

    Cardiolipin (CL) is a unique phospholipid in mitochondrial membranes with diverse biological functions. Induction of the peroxidase activity of cyt c by CL binding in the presence of hydrogen peroxide has been thought to be a key event in early apoptosis stage.
    We synthesized a series of oxidized CLs in which four acyl chains were oxidized in different patterns. All oxidized CLs elicited strong inducing ability of the peroxidase activity of cyt c. A difference in the oxidized position including the number of OH group did not affect the inducing ability. Our results do not support a currently accepted notion that hydrophobic interaction between the acyl chains of CL and cyt c is critical for the formation of specific CL-cyt c complex and consequent induction of the peroxide activity.
    Moreover, we synthesized some photoreactive CLs. By photoaffinity labeling experiments, the labeled peptide was detected by attaching a biotin to the incorporated ethynyl group by click chemistry.

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  • Synthesis of Cardiolipin Analogs and Characterization of Their Effects on Induction of the Peroxidase Activity of Cytochrome c

    2010 - 2011

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Young Scientists (B)  Grant-in-Aid for Young Scientists (B)

    ABE Masato

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    Grant amount:\3900000 ( Direct Cost: \3000000 、 Indirect Cost:\900000 )

    Cardiolipin(CL) is a major phospholipid found in mammalian mitochondria with a multitude of biological functions. Activation of the peroxidase activity of cytochrome c(cyt c) by CL and hydrogen peroxide in mitochondria has been suggested to be a key event in early apoptosis stage. We have developed the concise procedure for the synthesis of CL. With numerous CLs in hand, we examined the structural factors of CL required for the formation and the induction of peroxidase activity of cyt c-CL complex in liposomal system. The activation efficiencies of CLs are well correlated with the binding affinities to cyt c. Our results revealed that at low CL content, the saturated acyl chain of CL is favorable for the activation of peroxidase activity of CL-bound cyt c and the proposed critical role of double bond in the acyl chains is not a general feature of the cyt c-CL interaction.

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  • 機能性アセトゲニンの有機合成を基盤とする呼吸鎖酵素複合体-Iの研究

    2005 - 2006

    日本学術振興会  科学研究費助成事業 特別研究員奨励費  特別研究員奨励費

    安部 真人

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    Grant amount:\1800000 ( Direct Cost: \1800000 )

    アセトゲニン類の複合体-I阻害に要求される構造因子としてスペーサー部の機能に注目した類縁体合成を行った。スペーサー部にtetra-yne構造を導入した類縁体は、bis-THF環を持つ類縁体においては阻害活性の低下が見られなかったのに対してmono-THF環を持った類縁体においては顕著な活性の低下が見られた。この興味深い結果を更に深く掘り下げることでアセトゲニン類の阻害活性時におけるスペーサー部のコンフォメーションを検討した。
    tetra-yne構造の影響をより詳細に検討するためにtetra-yneに連なるメチレン鎖を改変した化合物を新規に合成した。Bis-THF環についてはメチレン鎖が2つ長いものと2つ短いものを合成した。Mono-THF環についてはスペーサー部全体の柔軟性の回復を期待してメチレン鎖が1つ長いものと2つ長いものを合成した。複合体-1阻害活性の評価の結果は、bis-THF環についてはIC50にして数nMレベルの強い活性を維持した。一方でmono-THF環についてはともにIC50で100nMを越え、期待したような阻害活性の回復は見られなかった。更にmono-THF環を持った類縁体についてスペーサーの長さは炭素数にして13個に固定した上で、同じ部位にそれぞれtri-yne、diyneと柔軟性を回復させた類縁体を合成した。結果はそれぞれ78nM、11nMと阻害活性の回復が認められた。このことからmono-THF環を持った類縁体に導入した多重結合は、THF環に近い位置に存在する立体障害として働いていることが強く示唆された。
    以上の結果は2007年3月の日本農芸化学会大会で口頭発表を行った。
    今後は更にスペーサー部の構造改変からスペーサー部の機能のみならずTHF環の働きについても考察できるような類縁体合成を行い、それらの結果を以って論文発表を行う予定である。

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